BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D09f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.7 SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 26 3.9 SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 5.2 SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 6.8 SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 6.8 SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 25 9.0 SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 25 9.0 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 27.1 bits (57), Expect = 1.7 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +3 Query: 129 RNCNLLLISPLFNGCYYTYKPSSSITLSIKK 221 RNC+++L + L N + + KP ++ L K Sbjct: 870 RNCSVMLFTALINRAFGSKKPKDAVNLGNNK 900 >SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual Length = 160 Score = 25.8 bits (54), Expect = 3.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 334 RNKGLGTGCHCREPW*RSTKQEPL 405 R+ G+ T CH PW S+K PL Sbjct: 77 RDLGVQTNCHSIVPWKSSSKLIPL 100 >SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosaccharomyces pombe|chr 1|||Manual Length = 922 Score = 25.4 bits (53), Expect = 5.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 63 RVSSNRCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCYY 179 R++SN+ Y + LTT + + L L + FN C Y Sbjct: 479 RINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVY 517 >SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 509 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = +3 Query: 63 RVSSNRCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCYYTYKPSSSI 203 + +NRC YK + D S + + N L+ G Y Y+ + S+ Sbjct: 231 KTKNNRCDYKFHHDGDISCMAWSPINWTLLVGGSTGNIYVYRRTKSM 277 >SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|Schizosaccharomyces pombe|chr 3|||Manual Length = 957 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 89 VQTSVRRNTTIRIQSTRALLISCRNLFQ 6 V TS+ N TI+ T +L+ C N+F+ Sbjct: 196 VLTSINENGTIKEFRTSRVLLRCPNVFK 223 >SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 24.6 bits (51), Expect = 9.0 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = +3 Query: 135 CNLLLISP-LFNGCYYTYKPSSSITLSIKKNRTKIRCVV 248 CNL+ S LF ++ YKPS+S S CVV Sbjct: 259 CNLITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVV 297 >SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 24.6 bits (51), Expect = 9.0 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = +3 Query: 36 CPCTLYPYCRVSSN 77 CPC ++P+ +V +N Sbjct: 475 CPCVVFPFTKVDAN 488 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,089,856 Number of Sequences: 5004 Number of extensions: 40960 Number of successful extensions: 74 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 74 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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