Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.7  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     26   3.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   5.2  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   6.8  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.8  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   9.0  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.0  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 129 RNCNLLLISPLFNGCYYTYKPSSSITLSIKK 221
           RNC+++L + L N  + + KP  ++ L   K
Sbjct: 870 RNCSVMLFTALINRAFGSKKPKDAVNLGNNK 900


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 334 RNKGLGTGCHCREPW*RSTKQEPL 405
           R+ G+ T CH   PW  S+K  PL
Sbjct: 77  RDLGVQTNCHSIVPWKSSSKLIPL 100


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 63  RVSSNRCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCYY 179
           R++SN+  Y + LTT   +   +   L L +  FN C Y
Sbjct: 479 RINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVY 517


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 63  RVSSNRCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCYYTYKPSSSI 203
           +  +NRC YK +   D S + +   N  L+     G  Y Y+ + S+
Sbjct: 231 KTKNNRCDYKFHHDGDISCMAWSPINWTLLVGGSTGNIYVYRRTKSM 277


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 89  VQTSVRRNTTIRIQSTRALLISCRNLFQ 6
           V TS+  N TI+   T  +L+ C N+F+
Sbjct: 196 VLTSINENGTIKEFRTSRVLLRCPNVFK 223


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 135 CNLLLISP-LFNGCYYTYKPSSSITLSIKKNRTKIRCVV 248
           CNL+  S  LF   ++ YKPS+S   S         CVV
Sbjct: 259 CNLITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVV 297


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  CPCTLYPYCRVSSN 77
           CPC ++P+ +V +N
Sbjct: 475 CPCVVFPFTKVDAN 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,856
Number of Sequences: 5004
Number of extensions: 40960
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)