BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D09f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932... 29 3.0 03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 27 9.1 02_05_0522 - 29744368-29745534 27 9.1 >09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709, 9327816-9327895,9328787-9328912,9329676-9329856, 9330514-9330578,9330655-9330915 Length = 338 Score = 28.7 bits (61), Expect = 3.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 132 NCNLLLISPLFNGCYYTYKP 191 NCNL++I LF Y+ YKP Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323 >03_02_0897 - 12239375-12239458,12240035-12240116,12240213-12240714, 12241150-12241303,12241458-12241629,12242237-12242443, 12242926-12243323 Length = 532 Score = 27.1 bits (57), Expect = 9.1 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Frame = -2 Query: 295 SRFLCPYIPMYA*IFKTTQRILVRFFLIDSVIEEEGLYV**HPLNS-GEINNKLQFLK-- 125 S+ CP IP +F T Q + FL+ EE L S G + + ++ Sbjct: 145 SKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLGYERLIMRSP 204 Query: 124 --RSEDGSVVKYILYKHLLEETRQ*GYRVQGH 35 R + SV K + K L+EE GYR++G+ Sbjct: 205 EYRGQSSSVFKSAMRKRLVEEE---GYRIRGN 233 >02_05_0522 - 29744368-29745534 Length = 388 Score = 27.1 bits (57), Expect = 9.1 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -2 Query: 331 IYLALSLHSRKQSRFLCPYIPMYA*IFKTTQRILVRFFLIDSVIEEEGL 185 +YLA ++ R RF C + P Y I+ +R V+ F+ D + GL Sbjct: 200 LYLAFNVSGRPYPRFACHFDP-YGPIYNDRER--VQIFISDVGVVSAGL 245 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,482,053 Number of Sequences: 37544 Number of extensions: 225447 Number of successful extensions: 368 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 368 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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