Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    29   3.0  
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...    27   9.1  
02_05_0522 - 29744368-29745534                                         27   9.1  

>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 NCNLLLISPLFNGCYYTYKP 191
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = -2

Query: 295 SRFLCPYIPMYA*IFKTTQRILVRFFLIDSVIEEEGLYV**HPLNS-GEINNKLQFLK-- 125
           S+  CP IP    +F T Q    + FL+    EE         L S G +  +   ++  
Sbjct: 145 SKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLGYERLIMRSP 204

Query: 124 --RSEDGSVVKYILYKHLLEETRQ*GYRVQGH 35
             R +  SV K  + K L+EE    GYR++G+
Sbjct: 205 EYRGQSSSVFKSAMRKRLVEEE---GYRIRGN 233


>02_05_0522 - 29744368-29745534
          Length = 388

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 331 IYLALSLHSRKQSRFLCPYIPMYA*IFKTTQRILVRFFLIDSVIEEEGL 185
           +YLA ++  R   RF C + P Y  I+   +R  V+ F+ D  +   GL
Sbjct: 200 LYLAFNVSGRPYPRFACHFDP-YGPIYNDRER--VQIFISDVGVVSAGL 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,053
Number of Sequences: 37544
Number of extensions: 225447
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)