Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22663| Best HMM Match : Thymosin (HMM E-Value=2.8)                  29   2.3  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_22663| Best HMM Match : Thymosin (HMM E-Value=2.8)
          Length = 190

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 217 LIDSVIEEEGLYV**HPLNSGEINNKLQFLKRSEDGSVVKYILYKHLLEET 65
           ++D + +EEG YV         +   L F + S  G+ V Y+LY H LE T
Sbjct: 123 IVDELSDEEGRYV------LDVLAVLLDFDELSPSGNSVAYLLYTHFLEAT 167


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 CNLLLISPLFNGCYYTYKP 191
           CN    +P+++GCYY Y P
Sbjct: 527 CNTPPTNPIYDGCYYHYLP 545


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 488 ITFWWLVHTSNGEDNSIN*K 429
           +  WW+VH    EDNSI  K
Sbjct: 617 VDVWWIVHDGELEDNSIQMK 636


>SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 48  LYPYCRVSSN-RCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCY 176
           L P  RVSSN R   +I+++T  S L  R C +  +  L +G Y
Sbjct: 96  LTPSVRVSSNNRWTVRIFVSTVRSLLSGRYCQVPTVRSLLSGRY 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,419
Number of Sequences: 59808
Number of extensions: 286160
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)