BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D09f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22663| Best HMM Match : Thymosin (HMM E-Value=2.8) 29 2.3 SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_22663| Best HMM Match : Thymosin (HMM E-Value=2.8) Length = 190 Score = 29.1 bits (62), Expect = 2.3 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -2 Query: 217 LIDSVIEEEGLYV**HPLNSGEINNKLQFLKRSEDGSVVKYILYKHLLEET 65 ++D + +EEG YV + L F + S G+ V Y+LY H LE T Sbjct: 123 IVDELSDEEGRYV------LDVLAVLLDFDELSPSGNSVAYLLYTHFLEAT 167 >SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2179 Score = 28.3 bits (60), Expect = 4.1 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 135 CNLLLISPLFNGCYYTYKP 191 CN +P+++GCYY Y P Sbjct: 527 CNTPPTNPIYDGCYYHYLP 545 >SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 488 ITFWWLVHTSNGEDNSIN*K 429 + WW+VH EDNSI K Sbjct: 617 VDVWWIVHDGELEDNSIQMK 636 >SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 537 Score = 27.1 bits (57), Expect = 9.4 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 48 LYPYCRVSSN-RCLYKIYLTTDPSSLRFRNCNLLLISPLFNGCY 176 L P RVSSN R +I+++T S L R C + + L +G Y Sbjct: 96 LTPSVRVSSNNRWTVRIFVSTVRSLLSGRYCQVPTVRSLLSGRY 139 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,057,419 Number of Sequences: 59808 Number of extensions: 286160 Number of successful extensions: 444 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 430 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 444 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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