BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D09f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g05440.1 68414.m00552 expressed protein ; expression supporte... 29 1.4 At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 28 3.3 At4g17505.1 68417.m02619 expressed protein contains Pfam profil... 27 7.7 >At1g05440.1 68414.m00552 expressed protein ; expression supported by MPSS Length = 393 Score = 29.5 bits (63), Expect = 1.4 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 127 KRSEDGSVV--KYILYKHLLEETRQ*GYRVQGHYLFHVEISSS 5 K ++DG ++ K +LYK +EE G+ +Q LFH SSS Sbjct: 243 KINQDGPMLNSKCVLYKSAIEEVSIWGWPLQTSGLFHTGFSSS 285 >At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribonuclease SP:P42815 Ribonuclease 3 precursor (EC 3.1.27.1) {Arabidopsis thaliana} Length = 222 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 69 SSNRCLYKIYLTTDPSSLRFRNCNLL 146 S N LY+IYL D S+ +F NC ++ Sbjct: 183 SHNSQLYQIYLCVDTSASKFINCPVM 208 >At4g17505.1 68417.m02619 expressed protein contains Pfam profile PF03080: Arabidopsis proteins of unknown function; expression supported by MPSS Length = 322 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -2 Query: 373 VHDNGSLFQDLYFFIYLALSLHSRKQSRFLC 281 +H S+ L+FF YL + H++ F C Sbjct: 1 MHLQNSMILSLFFFFYLVATTHAKDDQFFEC 31 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,583,517 Number of Sequences: 28952 Number of extensions: 201218 Number of successful extensions: 344 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 344 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -