Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05440.1 68414.m00552 expressed protein ; expression supporte...    29   1.4  
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo...    28   3.3  
At4g17505.1 68417.m02619 expressed protein  contains Pfam profil...    27   7.7  

>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 127 KRSEDGSVV--KYILYKHLLEETRQ*GYRVQGHYLFHVEISSS 5
           K ++DG ++  K +LYK  +EE    G+ +Q   LFH   SSS
Sbjct: 243 KINQDGPMLNSKCVLYKSAIEEVSIWGWPLQTSGLFHTGFSSS 285


>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
           ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
           3.1.27.1) {Arabidopsis thaliana}
          Length = 222

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 69  SSNRCLYKIYLTTDPSSLRFRNCNLL 146
           S N  LY+IYL  D S+ +F NC ++
Sbjct: 183 SHNSQLYQIYLCVDTSASKFINCPVM 208


>At4g17505.1 68417.m02619 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function;
           expression supported by MPSS
          Length = 322

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 373 VHDNGSLFQDLYFFIYLALSLHSRKQSRFLC 281
           +H   S+   L+FF YL  + H++    F C
Sbjct: 1   MHLQNSMILSLFFFFYLVATTHAKDDQFFEC 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,517
Number of Sequences: 28952
Number of extensions: 201218
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)