BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D08f (519 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 109 2e-25 SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 106 2e-24 SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.0 SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 9.0 >SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schizosaccharomyces pombe|chr 2|||Manual Length = 148 Score = 109 bits (262), Expect = 2e-25 Identities = 58/146 (39%), Positives = 69/146 (47%) Frame = +3 Query: 21 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 200 T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR FH Sbjct: 3 THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62 Query: 201 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 380 KN + P +NLD+LWTLV +TR KY PVIN++++ P PV Sbjct: 63 LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122 Query: 381 IVXXXXXXXXXXXXXXDVGGACVLSA 458 I+ GG L A Sbjct: 123 IIQTRYVSRRAEEKIKQAGGVVELIA 148 >SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual Length = 148 Score = 106 bits (255), Expect = 2e-24 Identities = 57/146 (39%), Positives = 69/146 (47%) Frame = +3 Query: 21 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 200 T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR FH Sbjct: 3 THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62 Query: 201 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 380 KN + P +NLD+LWTL+ + R KY PVIN++++ P+ PV Sbjct: 63 LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122 Query: 381 IVXXXXXXXXXXXXXXDVGGACVLSA 458 IV GG L A Sbjct: 123 IVQTRYVSRRAEEKIKQAGGVVELIA 148 >SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +3 Query: 234 NLDKLWTLVSEQTRLKYASAPDGKVP 311 NL K W +S K++ P+G +P Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348 >SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces pombe|chr 2|||Manual Length = 406 Score = 24.6 bits (51), Expect = 9.0 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -2 Query: 326 DNIDDGDLAIWSRCILQPRL 267 DN+D+ DLA +S+ I +P L Sbjct: 2 DNLDEDDLAFFSKPIKKPPL 21 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,888,363 Number of Sequences: 5004 Number of extensions: 36020 Number of successful extensions: 82 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 80 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 210309424 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -