Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D08f
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   130   6e-31
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    62   2e-10
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    28   3.5  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    28   3.5  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   4.6  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    28   4.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   8.0  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   8.0  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  130 bits (314), Expect = 6e-31
 Identities = 65/147 (44%), Positives = 82/147 (55%)
 Frame = +3

Query: 18  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 197
           A + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR F
Sbjct: 2   AHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVF 61

Query: 198 HFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQP 377
           H  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K            P+ P
Sbjct: 62  HLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETP 118

Query: 378 VIVXXXXXXXXXXXXXXDVGGACVLSA 458
           +IV                GGACVL A
Sbjct: 119 LIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 33/91 (36%), Positives = 46/91 (50%)
 Frame = +3

Query: 186 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXX 365
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 366 PKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 458
           P+ P+IV                GGACVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
 Frame = +3

Query: 15  EATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGK 179
           ++T  KK+ K  GH                   N GG   H + M+     ++ P  F K
Sbjct: 126 KSTKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKK 185

Query: 180 LGMRNFHFRK 209
           LG   F+F+K
Sbjct: 186 LGKSFFNFKK 195


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 329 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 433
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 329 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 433
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 121 PALPRPPGCLRCFPIRPCP 65
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 329 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 433
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 329 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 433
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 275 AEVCICSRWQGPRHQYCQSWILQVARQRQ 361
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 275 AEVCICSRWQGPRHQYCQSWILQVARQRQ 361
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +3

Query: 180 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 332
           LG  NF+++ ++++      +  WT  + +T LK+  +    +P  N+  +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +3

Query: 120 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 251
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 236 VQNWTEILVLSKVEISHTKFAKVSR 162
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 332 SFDNIDDGDLA-IWSRCILQPRLF 264
           S  N+  G L  IWSRCI QP  F
Sbjct: 14  SSGNVQKGKLLNIWSRCIAQPSSF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,759,567
Number of Sequences: 27780
Number of extensions: 215624
Number of successful extensions: 536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)