Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D07f
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    25   2.2  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   3.9  

>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 51  ELRRTLGLAAAKARKQA 1
           ELR+TLG A+A  RK+A
Sbjct: 115 ELRKTLGAASATGRKRA 131


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +3

Query: 201 FYVELCIHSICRNK*TDILAT*IKKKKKNS-------RGGPVPNSPYSE 326
           F V+ C+H  C N  T+++   +K+  +         RG PV ++ ++E
Sbjct: 75  FEVDTCMHLTCTNMSTEMIDAALKRAHETGCRNILALRGDPVKDTDWTE 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,485
Number of Sequences: 5004
Number of extensions: 8599
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)