Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D06f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38; Eukaryo...    92   6e-18
UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; ...    92   8e-18
UniRef50_Q965T1 Cluster: UPF0197 protein Y57E12AM.1; n=2; Caenor...    50   4e-05
UniRef50_UPI0000E4641D Cluster: PREDICTED: similar to conserved ...    43   0.005
UniRef50_Q8LCF2 Cluster: Putative uncharacterized protein; n=6; ...    37   0.32 
UniRef50_A0CBA6 Cluster: Chromosome undetermined scaffold_164, w...    34   1.7  
UniRef50_A2FDS4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_A4RZ64 Cluster: Predicted protein; n=2; Ostreococcus|Re...    32   9.2  
UniRef50_Q27911 Cluster: Homeodomain protein PmHox1; n=2; Polyan...    32   9.2  

>UniRef50_P61165 Cluster: UPF0197 protein C11orf10; n=38;
           Eukaryota|Rep: UPF0197 protein C11orf10 - Homo sapiens
           (Human)
          Length = 79

 Score = 92.3 bits (219), Expect = 6e-18
 Identities = 45/79 (56%), Positives = 54/79 (68%)
 Frame = -2

Query: 376 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 197
           +E+E+M RYTSP+NPAVFPH            TAWFFVYEVTSTK +RD++KELL+SLVA
Sbjct: 1   MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVA 60

Query: 196 AXXXXXXXXXXXLWVGIYV 140
           +           LWVGIYV
Sbjct: 61  SLFMGFGVLFLLLWVGIYV 79


>UniRef50_Q32P84 Cluster: UPF0197 protein C11orf10 homolog; n=2; Bos
           taurus|Rep: UPF0197 protein C11orf10 homolog - Bos
           taurus (Bovine)
          Length = 79

 Score = 91.9 bits (218), Expect = 8e-18
 Identities = 44/79 (55%), Positives = 54/79 (68%)
 Frame = -2

Query: 376 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 197
           +E+E+M RYTSP+NPAVFPH            TAWFFVYEVTSTK +RD++KELL+SLVA
Sbjct: 1   MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVA 60

Query: 196 AXXXXXXXXXXXLWVGIYV 140
           +           LWVGIY+
Sbjct: 61  SLFMGFGVLFLLLWVGIYI 79


>UniRef50_Q965T1 Cluster: UPF0197 protein Y57E12AM.1; n=2;
           Caenorhabditis|Rep: UPF0197 protein Y57E12AM.1 -
           Caenorhabditis elegans
          Length = 79

 Score = 49.6 bits (113), Expect = 4e-05
 Identities = 27/79 (34%), Positives = 40/79 (50%)
 Frame = -2

Query: 376 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 197
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 196 AXXXXXXXXXXXLWVGIYV 140
           +           LWVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>UniRef50_UPI0000E4641D Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to conserved
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 148

 Score = 42.7 bits (96), Expect = 0.005
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = -2

Query: 379 SLEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFV 263
           S  IESM RY SP+NPAV+PH             AWF V
Sbjct: 22  SAAIESMTRYVSPVNPAVYPHLTLILLTIGIFFMAWFLV 60


>UniRef50_Q8LCF2 Cluster: Putative uncharacterized protein; n=6;
           Magnoliophyta|Rep: Putative uncharacterized protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.32
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = -2

Query: 346 SPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 167
           SPI  A++P             TA FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 166 XXLWVGIYV 140
             L  G+YV
Sbjct: 68  LLLASGVYV 76


>UniRef50_A0CBA6 Cluster: Chromosome undetermined scaffold_164,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_164,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 720

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 362 NDPVHVANKPGSFSTSN-LFVARNRNILHGLVLRLRSYKY*SLKRYVQRVTFIIGGRLIF 186
           ND V     P +F  S  +F   N   ++G+ +R   Y     K YVQ    I+ GRLI+
Sbjct: 17  NDEVEYFENPDAFENSQKVFPLNNNGQIYGIYVRRLEYYI--KKNYVQEGK-IVKGRLIY 73

Query: 185 WFRNFI 168
            F N+I
Sbjct: 74  TFYNYI 79


>UniRef50_A2FDS4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 489

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 99  YIIHNLNYTLH*YHT*IPTHSNKNKIPKPENKAATNDKSNSLNISLE 239
           ++ H+    +H  +  +P H  +N+IPKP N    N   + LN+  +
Sbjct: 51  HVYHSYPILMHQIYDGLPEHEQQNQIPKPNNPEFKNIFLHKLNLGCQ 97


>UniRef50_A4RZ64 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 938

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 294 IPSNKKVRCGKTAGFIGDVYRIIDSISRLIFMAILERNTIKNKNHL-VPNSARGED 458
           I   KKVR G   G+IG +  + D+  RL   A     T+ N+ HL VP  A   D
Sbjct: 623 IGQTKKVRAGVYKGYIGRIVDVTDTSVRLELQAQARTVTV-NREHLDVPQVAPSRD 677


>UniRef50_Q27911 Cluster: Homeodomain protein PmHox1; n=2;
           Polyandrocarpa misakiensis|Rep: Homeodomain protein
           PmHox1 - Polyandrocarpa misakiensis
          Length = 167

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 177 PKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKTAGF 338
           P P+ + +TN+++N+ + +    +  T   KN   KN   PS K  +    AGF
Sbjct: 54  PAPKTEDSTNNENNNNSSAKTTSLEATKLEKNDTYKNYSSPSQKSQQSPTAAGF 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,061,646
Number of Sequences: 1657284
Number of extensions: 8618977
Number of successful extensions: 20355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20350
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)