Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  31   0.76 
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    27   9.4  

>SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 523

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 384 FMAILERNTIKNKNHLVPNSARGEDPIEFYNLF 482
           F+AIL +   + +NH++ NS+   +P++ Y  F
Sbjct: 321 FLAILIQLPARKRNHILRNSSSSSEPLDLYEQF 353


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 270 SSFTKLQVLK---PQEICSKSYFYHWWPPYFLVSEFYS 166
           +SF  +QVLK    + IC+ + FYH W  Y  + E ++
Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKYQALPERFN 386


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 VTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRIID--SISRLIFMAIL 398
           ++S  K    KN+ I  N   + GK   F G+VY + D  +I+  +F+ ++
Sbjct: 235 ISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVYSLKDQCTIAEQVFVILM 285


>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 153 THSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKT 329
           T   K  IP P +   T   + +  ++ +     TS   N+  K   IP++++ R  KT
Sbjct: 196 TEEEKGPIPVPPSNRPTMSPATTNQLATQGDNFTTSPLANRPTKMTNIPTDQEERINKT 254


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 267 KNQAVKNIPIPSNKKVRCGKTAGFIGDVY 353
           + Q   N P P+ KKV  G  A  + DVY
Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,303
Number of Sequences: 59808
Number of extensions: 270758
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)