Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D06f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2809|AAF49405.1|   78|Drosophila melanogaster CG9669-PA...    58   1e-08
BT011105-1|AAR82771.1|   74|Drosophila melanogaster LP09435p pro...    56   2e-08
AY122183-1|AAM52695.1| 1380|Drosophila melanogaster LD40412p pro...    28   6.7  
AE014297-4410|AAF56915.1| 1380|Drosophila melanogaster CG1911-PA...    28   6.7  

>AE014296-2809|AAF49405.1|   78|Drosophila melanogaster CG9669-PA
           protein.
          Length = 78

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = -2

Query: 370 IESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRD--MFKELLLSLVA 197
           ++ M RY SP+NPAVFPH            TAWFF++ V S K+S++  + KELL+SL A
Sbjct: 1   MDVMQRYVSPVNPAVFPHLATVLLVIGTFFTAWFFIF-VVSRKSSKESTLIKELLISLCA 59

Query: 196 AXXXXXXXXXXXLWVGIYV 140
           +           L VGIYV
Sbjct: 60  SIFLGFGIVFLLLTVGIYV 78


>BT011105-1|AAR82771.1|   74|Drosophila melanogaster LP09435p
           protein.
          Length = 74

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = -2

Query: 355 RYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRD--MFKELLLSLVAAXXXX 182
           RY SP+NPAVFPH            TAWFF++ V S K+S++  + KELL+SL A+    
Sbjct: 2   RYVSPVNPAVFPHLATVLLVIGTFFTAWFFIF-VVSRKSSKESTLIKELLISLCASIFLG 60

Query: 181 XXXXXXXLWVGIYV 140
                  L VGIYV
Sbjct: 61  FGIVFLLLTVGIYV 74


>AY122183-1|AAM52695.1| 1380|Drosophila melanogaster LD40412p protein.
          Length = 1380

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 159  SNKNKIPKPENKAATNDKSNSLNISLE 239
            SN NK+ KPE KA   +  N LN  L+
Sbjct: 1288 SNTNKLAKPELKAVVTEFENRLNECLQ 1314


>AE014297-4410|AAF56915.1| 1380|Drosophila melanogaster CG1911-PA
            protein.
          Length = 1380

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 159  SNKNKIPKPENKAATNDKSNSLNISLE 239
            SN NK+ KPE KA   +  N LN  L+
Sbjct: 1288 SNTNKLAKPELKAVVTEFENRLNECLQ 1314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,767
Number of Sequences: 53049
Number of extensions: 397340
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)