Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical ...    50   1e-06
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   2.7  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   2.7  
U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linke...    29   2.7  
AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-lin...    29   2.7  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   2.7  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   2.7  

>AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical
           protein Y57E12AM.1 protein.
          Length = 79

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 40/79 (50%)
 Frame = -2

Query: 376 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 197
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 196 AXXXXXXXXXXXLWVGIYV 140
           +           LWVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 644 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 690


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 613 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 659


>U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform c protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 553 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 599


>AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1c protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 553 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 599


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 644 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 690


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 216 YFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*C----NNTPFLY 79
           +F   W PY++++  Y  C G    C  +  Y LSY  C    +  PF Y
Sbjct: 613 FFAILWSPYYIMATVYGFCKG---ECIPSFLYTLSYYMCYLNSSGNPFAY 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,736
Number of Sequences: 27780
Number of extensions: 215867
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)