Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.8  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 258 KLQVLKPQEICSKSYFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*CNNT 91
           K++ LK   I   + F+  W PY+++S +Y       +  D  ++  L    C N+
Sbjct: 255 KIRTLKMTVIII-AVFFICWTPYYVMSLWYWIDRNSAYKIDQRIQKGLFLFACTNS 309


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 260 VNEEPGREEYSYSEQQKG*MWKNCRVY 340
           + E   RE YS S +++   +KN R Y
Sbjct: 263 LEERTSRERYSRSREREQKSYKNEREY 289


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 378 LIFMAILERNTIKNKNHLVPNSARG 452
           L+F  +L   T  ++ + VP+S RG
Sbjct: 7   LLFFLLLSSCTRPSRGNAVPSSQRG 31


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 378 LIFMAILERNTIKNKNHLVPNSARG 452
           L+F  +L   T  ++ + VP+S RG
Sbjct: 7   LLFFLLLSSCTRPSRGNAVPSSQRG 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,818
Number of Sequences: 438
Number of extensions: 2856
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)