Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29735.1 68417.m04234 expressed protein contains Pfam domain ... 37 0.009
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 30 1.1
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 30 1.1
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 30 1.1
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A... 29 2.5
At5g41620.1 68418.m05057 expressed protein weak similarity to mi... 28 4.4
At3g50300.1 68416.m05501 transferase family protein similar to a... 27 5.8
At2g30630.2 68415.m03733 expressed protein similar to H1-1flk [A... 27 5.8
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 27 7.7
>At4g29735.1 68417.m04234 expressed protein contains Pfam domain
PF05251: Uncharacterised protein family (UPF0197)
Length = 76
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = -2
Query: 346 SPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 167
SPI A++P TA FF+YE TS++ +R + KEL S VA+
Sbjct: 8 SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67
Query: 166 XXLWVGIYV 140
L G+YV
Sbjct: 68 LLLASGVYV 76
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 353 PDH*FNFETHFYGYFRTKHYKKQKPPRAEF 442
PD+ F F +GY+R KH+ PP F
Sbjct: 156 PDYAFLFGGEGHGYYRYKHFLSMHPPGGPF 185
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 353 PDH*FNFETHFYGYFRTKHYKKQKPPRAEF 442
PD+ F F +GY+R KH+ PP F
Sbjct: 156 PDYAFLFGGEGHGYYRYKHFLSMHPPGGPF 185
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 353 PDH*FNFETHFYGYFRTKHYKKQKPPRAEF 442
PD+ F F +GY+R KH+ PP F
Sbjct: 156 PDYAFLFGGEGHGYYRYKHFLSMHPPGGPF 185
>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
[Arabidopsis thaliana] GI:388260
Length = 531
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 288 YSSRPGSSFTKLQVLKPQEICSKSYF-YHWWPPYFLVSEFYS 166
+S PG+ +++++ E C SYF YHW ++S+ S
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQILS 157
>At5g41620.1 68418.m05057 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 (GI:2773363)
[Drosophila melanogaster]; weak similarity to
Synaptonemal complex protein 1 (SCP-1 protein)
(Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
DNA double-strand break repair rad50 ATPase.
(Swiss-Prot:P58301) [Pyrococcus furiosus]
Length = 543
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 150 PTHSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKK 311
P +SN NK KPEN+ AT +K++ + + + S T+ + PS+++
Sbjct: 441 PENSNNNK--KPENECATTNKNDVMGEMIRTHRRLLSETREIDEASCNFPSSRR 492
>At3g50300.1 68416.m05501 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 448
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 156 HSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKTAG 335
H K K+ + KA ND+ S +I + +L V + V++ + ++ RCG A
Sbjct: 234 HFTKEKLS--DLKAKANDEIGSSDIKISSLQAVLAHLWRSIVRHSGLNQEEESRCGVAAD 291
Query: 336 F 338
F
Sbjct: 292 F 292
>At2g30630.2 68415.m03733 expressed protein similar to H1-1flk
[Arabidopsis thaliana] GI:388260
Length = 552
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 288 YSSRPGSSFTKLQVLKPQEICSKSYF-YHWWPPYFLVSE 175
+S PG+ +++++ E C SYF YHW ++S+
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQ 154
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 290 SYSEQQKG*MWKNCRVYWRRVP 355
SY Q + +WK + YWR VP
Sbjct: 1131 SYLSQFQACLWKQHKSYWRNVP 1152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,938
Number of Sequences: 28952
Number of extensions: 192692
Number of successful extensions: 427
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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