Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D04f
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    50   2e-07
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    30   0.17 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.6  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    24   8.7  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +2

Query: 326 ALXDKDGDGTITTKELGTGMRXLGQNPTEAELPDMI 433
           +L D+D DG IT+ ELG  MR LGQ+PT AEL DMI
Sbjct: 19  SLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMI 54



 Score = 32.7 bits (71), Expect = 0.025
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 335 DKDGDGTITTKELGTGMRXLGQNPTEAELPDMI 433
           DKDG+G IT +EL   +  LG+  ++ E+ DMI
Sbjct: 95  DKDGNGYITVEELTHVLTSLGERLSQEEVADMI 127


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 326 ALXDKDGDGTITTKELGTGMRXLGQNPTEAELPDM 430
           AL DKDGDG I  +++ T +  L Q+ +E  +  M
Sbjct: 55  ALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 425 LEVRLLWGSVLAXSSRCPALWS*WCHR 345
           LE++  WGS+ A   +   +W+ W  R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 335 DKDGDGTITTKELGTGMRXLGQNPTEAELPDMI 433
           DKD  G I T +    M+ LG+  ++ E+  M+
Sbjct: 88  DKDNSGYIETAKFADYMKTLGEKLSDNEVQLMV 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,227
Number of Sequences: 5004
Number of extensions: 8754
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)