BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D03f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 28 0.97 SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p... 27 1.7 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.2 SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 3.9 SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 5.2 >SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 429 Score = 27.9 bits (59), Expect = 0.97 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 108 HTGQLFPISLPGFFYSRF*VNSCADI 185 H G+LF + PG+ YSR +N AD+ Sbjct: 43 HGGRLFGLQEPGYIYSRM-MNPTADV 67 >SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 109 Score = 27.1 bits (57), Expect = 1.7 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 343 PLGAARSIQVSFDGSRHNQCILTSTYVFDEI 251 PL AR+I+++FD HN I + FD I Sbjct: 2 PLEKARAIEIAFDNVFHNTKIPDNLQQFDAI 32 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 26.6 bits (56), Expect = 2.2 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +1 Query: 25 VTTYHQVGPMLVCPQRQ*KINKKNLFTFTQVNCSQSRYLDFFTQGSKLIVVLT*CSEILK 204 +T V P L+ R+ K + + L Q NC L F+T ++ + + C EI + Sbjct: 4 ITRLDAVSPYLI---RRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRR 60 Query: 205 IL 210 I+ Sbjct: 61 II 62 >SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 1616 Score = 25.8 bits (54), Expect = 3.9 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = +1 Query: 451 GNLAHGHWGQFPHNGRLSAGT 513 GN+ H HNGRLS T Sbjct: 559 GNMTHSASSSISHNGRLSTST 579 >SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces pombe|chr 3|||Manual Length = 742 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 298 RHNQCILTSTYVFDEIETKK*LKLFI 221 RHN+C+L Y +D +K+ L+LF+ Sbjct: 511 RHNRCLLPDDYQYD---SKRLLQLFL 533 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,194,154 Number of Sequences: 5004 Number of extensions: 42201 Number of successful extensions: 109 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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