Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    28   0.97 
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p...    27   1.7  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    27   2.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.9  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   5.2  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 108 HTGQLFPISLPGFFYSRF*VNSCADI 185
           H G+LF +  PG+ YSR  +N  AD+
Sbjct: 43  HGGRLFGLQEPGYIYSRM-MNPTADV 67


>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 343 PLGAARSIQVSFDGSRHNQCILTSTYVFDEI 251
           PL  AR+I+++FD   HN  I  +   FD I
Sbjct: 2   PLEKARAIEIAFDNVFHNTKIPDNLQQFDAI 32


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 25  VTTYHQVGPMLVCPQRQ*KINKKNLFTFTQVNCSQSRYLDFFTQGSKLIVVLT*CSEILK 204
           +T    V P L+   R+ K + + L    Q NC     L F+T   ++  + + C EI +
Sbjct: 4   ITRLDAVSPYLI---RRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRR 60

Query: 205 IL 210
           I+
Sbjct: 61  II 62


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 451 GNLAHGHWGQFPHNGRLSAGT 513
           GN+ H       HNGRLS  T
Sbjct: 559 GNMTHSASSSISHNGRLSTST 579


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 298 RHNQCILTSTYVFDEIETKK*LKLFI 221
           RHN+C+L   Y +D   +K+ L+LF+
Sbjct: 511 RHNRCLLPDDYQYD---SKRLLQLFL 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,154
Number of Sequences: 5004
Number of extensions: 42201
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)