Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   0.98 
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447...    28   4.0  

>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 147 FYSRF*VNSCADIV-LRNPKDFDLLTIKSFNHFFVSISSNTYVLVKM 284
           F +RF + +  ++  ++NPKD D ++ ++ NHF  ++ S   V  KM
Sbjct: 361 FITRFALANIVELYHIQNPKDTDFISAETANHFVYNLMSIRDVASKM 407


>12_02_0067 +
           13144002-13144203,13144471-13144529,13144638-13144713,
           13144802-13144873,13144969-13145056,13145365-13145601,
           13145705-13145910,13145946-13146122,13146220-13146251,
           13146330-13146432,13146547-13146815,13148029-13148175,
           13148272-13148412,13148509-13148595,13148841-13148931,
           13149093-13149192,13149292-13149352,13149442-13149663,
           13149756-13149872,13149972-13150061,13150168-13150344
          Length = 917

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +3

Query: 180 DIVLRNPKDFDLLTIKSF----NHFFVSISSNTYVL 275
           +IV  NPKDFD    K+F     HFF SI   T  L
Sbjct: 837 EIVHYNPKDFDFGKKKAFPFRDQHFFASIEKATLEL 872


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,090
Number of Sequences: 37544
Number of extensions: 271232
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)