Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49142| Best HMM Match : RVT_1 (HMM E-Value=0.27)                    29   2.3  
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   4.1  
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    28   5.4  
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_49142| Best HMM Match : RVT_1 (HMM E-Value=0.27)
          Length = 154

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 138 PGFFYSRF*VNSCADIVLRNPKDFDLLTIKSFNHFF 245
           PG F ++  + S   IV  NP+DF LL +K    F+
Sbjct: 32  PGVFLAKTDIKSAFRIVPINPEDFHLLVMKWHGKFY 67


>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 764

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 410 RNKALRSKAVKDRTVK*ACLARPFRRRPVDSGILRR 303
           R K L S+ VK +T+     +R  RR+P+DSG +RR
Sbjct: 317 RRKTLDSRHVKRKTLD----SRHVRRKPLDSGHVRR 348


>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 134 RDWEQLTCVNVNRFFLFIFY 75
           RDW+ LT ++V   FLF+F+
Sbjct: 143 RDWQTLTRISVAPMFLFLFF 162


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 138 PGFFYSRF*VNSCADIVLRNPKDFDLLTIKSFNHFF 245
           PG F ++  + S   IV  NP+DF LL +K  + F+
Sbjct: 244 PGVFLAKTDIKSAFRIVPINPEDFHLLGMKWQDKFY 279


>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -3

Query: 123 TIDLC--ECEQIFFIYFLLP 70
           TID+C  +CE  FF+Y+L P
Sbjct: 558 TIDICVEKCEAGFFVYYLRP 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,036
Number of Sequences: 59808
Number of extensions: 330590
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)