BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D03f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49142| Best HMM Match : RVT_1 (HMM E-Value=0.27) 29 2.3 SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59) 28 4.1 SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23) 28 5.4 SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_49142| Best HMM Match : RVT_1 (HMM E-Value=0.27) Length = 154 Score = 29.1 bits (62), Expect = 2.3 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 138 PGFFYSRF*VNSCADIVLRNPKDFDLLTIKSFNHFF 245 PG F ++ + S IV NP+DF LL +K F+ Sbjct: 32 PGVFLAKTDIKSAFRIVPINPEDFHLLVMKWHGKFY 67 >SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59) Length = 764 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = -1 Query: 410 RNKALRSKAVKDRTVK*ACLARPFRRRPVDSGILRR 303 R K L S+ VK +T+ +R RR+P+DSG +RR Sbjct: 317 RRKTLDSRHVKRKTLD----SRHVRRKPLDSGHVRR 348 >SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 364 Score = 28.3 bits (60), Expect = 4.1 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -1 Query: 134 RDWEQLTCVNVNRFFLFIFY 75 RDW+ LT ++V FLF+F+ Sbjct: 143 RDWQTLTRISVAPMFLFLFF 162 >SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23) Length = 932 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 138 PGFFYSRF*VNSCADIVLRNPKDFDLLTIKSFNHFF 245 PG F ++ + S IV NP+DF LL +K + F+ Sbjct: 244 PGVFLAKTDIKSAFRIVPINPEDFHLLGMKWQDKFY 279 >SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 899 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Frame = -3 Query: 123 TIDLC--ECEQIFFIYFLLP 70 TID+C +CE FF+Y+L P Sbjct: 558 TIDICVEKCEAGFFVYYLRP 577 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,690,036 Number of Sequences: 59808 Number of extensions: 330590 Number of successful extensions: 583 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 582 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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