Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    27   6.2  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 85  NKKNLFTFTQVNCSQSRYLDFFTQGSKLI 171
           N KN  T   ++C Q + LDF  QG+KLI
Sbjct: 177 NSKNCETIHTLDCHQDQVLDFDVQGNKLI 205


>U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical
           protein F54E7.9 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 93  KSVHIHTGQLFPISLPGFFYSRF*VNSCADIVLRNPKDFDLLTIKSFN 236
           K+V I    +FP+S    FY     N    +V+RN +   ++ +K  N
Sbjct: 31  KTVRILVSSIFPVSYSDKFYQECMNNELTGVVIRNGEAIAIVAVKPEN 78


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 ILTS*L*KASIIFLFRFHQIRTYLLKCIDCALIRRRIPEST 327
           +LT  + K+  +   RF Q   Y+ KCID A +R+    ST
Sbjct: 399 VLTKNVNKSHSLRSRRFTQFEKYIKKCIDDAKLRKNSTYST 439


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 521 CTVVPA-LSLPLCGNCPQ*PCAKFPQTCCR 435
           C   PA   LP    CP  PC   P+ CC+
Sbjct: 645 CCAPPAPCCLPTIPCCPPIPCCPQPKICCQ 674


>Z77666-9|CAJ43912.1|  541|Caenorhabditis elegans Hypothetical
           protein K08E7.5d protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 521 CTVVPA-LSLPLCGNCPQ*PCAKFPQTCCR 435
           C   PA   LP    CP  PC   P+ CC+
Sbjct: 290 CCAPPAPCCLPTIPCCPPIPCCPQPKICCQ 319


>Z77666-8|CAJ43910.1|  493|Caenorhabditis elegans Hypothetical
           protein K08E7.5b protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 521 CTVVPA-LSLPLCGNCPQ*PCAKFPQTCCR 435
           C   PA   LP    CP  PC   P+ CC+
Sbjct: 242 CCAPPAPCCLPTIPCCPPIPCCPQPKICCQ 271


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
            K08E7.5a protein.
          Length = 1221

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 521  CTVVPA-LSLPLCGNCPQ*PCAKFPQTCCR 435
            C   PA   LP    CP  PC   P+ CC+
Sbjct: 970  CCAPPAPCCLPTIPCCPPIPCCPQPKICCQ 999


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,705
Number of Sequences: 27780
Number of extensions: 254545
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)