Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 409  RKTEIYQYILQHVCGNLAHGHWGQF 483
            + +E Y+Y ++ +CGN  H     F
Sbjct: 1585 KASEDYRYSVRGLCGNFDHDSTNDF 1609


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 521 CTVVPALSLPLCGNC 477
           C V+ A + P+CG C
Sbjct: 67  CPVLRAYTCPICGAC 81


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 454 NLAHGHWGQFPHNGR 498
           +L H HW  FP  G+
Sbjct: 40  DLVHPHWRAFPAPGK 54


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 253 FHQIRTYLLKCIDCALIRRRIPESTGRRLKGRARQA 360
           +  + ++ +  +  +L+   I  +T RRL+ RARQ+
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQS 234


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 253 FHQIRTYLLKCIDCALIRRRIPESTGRRLKGRARQA 360
           +  + ++ +  +  +L+   I  +T RRL+ RARQ+
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQS 234


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 253 FHQIRTYLLKCIDCALIRRRIPESTGRRLKGRARQA 360
           +  + ++ +  +  +L+   I  +T RRL+ RARQ+
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,375
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)