Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 217 6e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 118 5e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 4e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 6e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 5e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 5e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 5e-08
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.24
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.73
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.7
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.9
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 217 bits (531), Expect = 6e-58
Identities = 95/101 (94%), Positives = 99/101 (98%)
Frame = +3
Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 392
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 64.9 bits (151), Expect = 7e-12
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQI+FETFN PA YVAIQAVLSLYAS
Sbjct: 111 NPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 118 bits (284), Expect = 5e-28
Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 288 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPV 395
+ PIE GI+ NW DME+IW + + + +L PEEHP+
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPL 108
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 428 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
N+EK+ + +ET N PA+ ++Q VL+LYAS
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.5 bits (227), Expect = 4e-21
Identities = 43/97 (44%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Frame = +3
Query: 96 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 269
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 380
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
Score = 44.8 bits (101), Expect = 8e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517
+P NREKM + MFE + +YVAIQAVLSLYA
Sbjct: 111 NPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.5 bits (160), Expect = 6e-13
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 236
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 237 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 44.8 bits (101), Expect = 8e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+P NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 134 NPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 5e-10
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 288 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
+ P E +++NWD ME++ +TF +L + EHP+
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118
Score = 29.9 bits (64), Expect = 0.24
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLY 514
+P R MT+++FE +N P++ I + S Y
Sbjct: 126 NPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.8 bits (136), Expect = 5e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
G + +K I +G V NWD +W + +L+ P EHP+
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Score = 31.5 bits (68), Expect = 0.079
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+P NR K + MFE+ PA Y+A Q + +AS
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFAS 143
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.0 bits (119), Expect = 5e-08
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 273 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389
I + +K +GI+ +W+ W +L+V P E+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEY 102
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 153 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 296
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 250 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 89
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 261 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 172
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 290 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 111
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 288 KYPIEH--GIVTNWDDMEKIW 344
++ H G + +W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 253 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 137
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 290 FEGQDTSFALCLISYIRVLLSHTDHHA 210
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 294 PIEHGIVTNWDDMEKIWHHTF 356
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 213 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 299
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 120 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 272
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,548
Number of Sequences: 5004
Number of extensions: 50018
Number of successful extensions: 147
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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