BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308D02f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 217 6e-58 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 118 5e-28 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 4e-21 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 6e-13 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 5e-10 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 5e-10 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 5e-08 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.24 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.73 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.7 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.2 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.2 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.9 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.9 SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.8 SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 217 bits (531), Expect = 6e-58 Identities = 95/101 (94%), Positives = 99/101 (98%) Frame = +3 Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 392 RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102 Score = 64.9 bits (151), Expect = 7e-12 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +2 Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520 +PK NREKMTQI+FETFN PA YVAIQAVLSLYAS Sbjct: 111 NPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 118 bits (284), Expect = 5e-28 Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 1/97 (1%) Frame = +3 Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 288 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPV 395 + PIE GI+ NW DME+IW + + + +L PEEHP+ Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPL 108 Score = 37.9 bits (84), Expect = 0.001 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 428 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520 N+EK+ + +ET N PA+ ++Q VL+LYAS Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYAS 150 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 95.5 bits (227), Expect = 4e-21 Identities = 43/97 (44%), Positives = 68/97 (70%), Gaps = 2/97 (2%) Frame = +3 Query: 96 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 269 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 380 R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98 Score = 44.8 bits (101), Expect = 8e-06 Identities = 21/34 (61%), Positives = 25/34 (73%) Frame = +2 Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517 +P NREKM + MFE + +YVAIQAVLSLYA Sbjct: 111 NPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 68.5 bits (160), Expect = 6e-13 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 24/118 (20%) Frame = +3 Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 236 +++DNG+G K G+AG+DAP VFP+++ R G G M K Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 237 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389 D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124 Score = 44.8 bits (101), Expect = 8e-06 Identities = 19/35 (54%), Positives = 26/35 (74%) Frame = +2 Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520 +P NRE +IMFE+FN +Y+A+QAVL+L AS Sbjct: 134 NPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 58.8 bits (136), Expect = 5e-10 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Frame = +3 Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287 LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82 Query: 288 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395 + P E +++NWD ME++ +TF +L + EHP+ Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118 Score = 29.9 bits (64), Expect = 0.24 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +2 Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLY 514 +P R MT+++FE +N P++ I + S Y Sbjct: 126 NPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 58.8 bits (136), Expect = 5e-10 Identities = 33/101 (32%), Positives = 53/101 (52%) Frame = +3 Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272 +EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61 Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395 G + +K I +G V NWD +W + +L+ P EHP+ Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101 Score = 31.5 bits (68), Expect = 0.079 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520 +P NR K + MFE+ PA Y+A Q + +AS Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFAS 143 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 52.0 bits (119), Expect = 5e-08 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Frame = +3 Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272 EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61 Query: 273 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389 I + +K +GI+ +W+ W +L+V P E+ Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEY 102 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 31.1 bits (67), Expect = 0.10 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 153 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 296 G+ PRA F ++ P H G+++ M KD G+E S +G + + P Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.9 bits (64), Expect = 0.24 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -2 Query: 250 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 89 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 0.73 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 261 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 172 + L+ K+PS PY SRP A S TR Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 27.1 bits (57), Expect = 1.7 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = -1 Query: 290 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 111 F G +F CLI++IR +SH D EHG II C T L G I+YY Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 26.6 bits (56), Expect = 2.2 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Frame = +3 Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287 +V+DNG+ KAGFAG P+ + R + G + ++G+E + TL Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57 Query: 288 KYPIEH--GIVTNWDDMEKIW 344 ++ H G + +W +W Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 2.2 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 253 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 137 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 3.9 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 290 FEGQDTSFALCLISYIRVLLSHTDHHA 210 +EG+DT+ +Y+R++L TD A Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 25.8 bits (54), Expect = 3.9 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = +3 Query: 294 PIEHGIVTNWDDMEKIWHHTF 356 PI+ G V +W+ ++ W H + Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133 >SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 564 Score = 25.0 bits (52), Expect = 6.8 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 213 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 299 +M+G +Y+G AQ KR +LT + I Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193 >SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 485 Score = 24.6 bits (51), Expect = 9.0 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Frame = +3 Query: 120 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 272 N +GM + R F S VG + VG Q+DSY+ D++ S+R Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,308,548 Number of Sequences: 5004 Number of extensions: 50018 Number of successful extensions: 147 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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