Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 229 1e-60
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 2e-59
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 2e-59
SB_56| Best HMM Match : Actin (HMM E-Value=0) 223 7e-59
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 2e-58
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 9e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 4e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 52 2e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 3e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 36 0.015
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.44
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.44
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.58
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.58
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.76
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.76
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.0
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.0
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.0
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.0
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 29 2.3
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 2.3
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 2.3
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 3.1
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 7.1
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5) 27 7.1
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 27 7.1
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 9.4
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 27 9.4
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 27 9.4
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 229 bits (560), Expect = 1e-60
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +3
Query: 84 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 263
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 264 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 112 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 146
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 225 bits (549), Expect = 2e-59
Identities = 101/104 (97%), Positives = 103/104 (99%)
Frame = +3
Query: 84 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 263
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 264 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 112 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 146
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 225 bits (549), Expect = 2e-59
Identities = 99/104 (95%), Positives = 103/104 (99%)
Frame = +3
Query: 84 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 263
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 264 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 112 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 146
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 223 bits (545), Expect = 7e-59
Identities = 100/102 (98%), Positives = 102/102 (100%)
Frame = +3
Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 103
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 111 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 145
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 222 bits (542), Expect = 2e-58
Identities = 99/102 (97%), Positives = 102/102 (100%)
Frame = +3
Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 103
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 111 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 145
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 9e-47
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +3
Query: 90 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 269
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 270 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 356
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 428 NREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
N + M +IMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYAS 108
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 275
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 276 ILTLKYPIEHGIVTNWDDMEKIWHHTF 356
+L + YP+++GIV NWDDM+ +W +TF
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517
+P NREKM ++MFE + +Y+AIQAVL+LYA
Sbjct: 115 NPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYA 148
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 209
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 209
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NRE+M Q+MFE+FN P MYVA+QAV++LYAS
Sbjct: 2156 NPKMNRERMVQLMFESFNVPCMYVAVQAVMALYAS 2190
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +3
Query: 78 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 248
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 249 GDEAQSKRGILTL 287
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 222 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/35 (57%), Positives = 30/35 (85%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+P+ NREK ++ FETFN PA+++++QAVLSLYA+
Sbjct: 137 NPRRNREKAAEVFFETFNVPALFISMQAVLSLYAT 171
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 96 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 275
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 276 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 365
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 449 IMFETFNTPAMYVAIQAVLSLYAS 520
IMFE FN+PA+YVAIQAVLSLYAS
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYAS 24
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 206 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 90
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 422 KXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+ REK+T++MFE +N PA ++ +VL+ +A+
Sbjct: 46 RIKREKLTELMFEKYNVPAFFLCKNSVLTAFAN 78
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
PI+ G++ +WD EKI + + ++ HP+
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPL 36
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 181 GNTARGASSPAKPALHIPEPLSTT 110
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 193 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 251
Query: 152 CETGLAHT 129
CET L T
Sbjct: 252 CETQLVPT 259
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 181 GNTARGASSPAKPALHIPEPLSTT 110
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 251 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 309
Query: 152 CETGLAHT 129
CET L T
Sbjct: 310 CETQLVLT 317
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 71 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 129
Query: 152 CETGLAHT 129
CET L T
Sbjct: 130 CETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 105 VVPVFKKSSKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 163
Query: 152 CETGLAHT 129
CET L T
Sbjct: 164 CETQLVLT 171
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 0.76
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 388 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 446
Query: 152 CETGLAHT 129
CET L T
Sbjct: 447 CETQLVLT 454
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 0.76
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C V+LSH + H M D +HG RS S
Sbjct: 229 VVPVFKKSGKDNPENYRPISLTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFS 287
Query: 152 CETGLAHT 129
CET L T
Sbjct: 288 CETQLVLT 295
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C ++LSH + H M D +HG RS S
Sbjct: 153 VVPVFKKSSKDNPENYRPISLTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFS 211
Query: 152 CETGLAHT 129
CET L T
Sbjct: 212 CETQLVLT 219
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 210 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 268
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 269 SIFQHGFRQALSCETQLVLT 288
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 181 GNTARGASSPAKPALHIPEPLSTT 110
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1609 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1667
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 1668 SIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 637 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 695
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 696 SIFQHGFRQALSCETQLVLT 715
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 1047 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 1105
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 1106 SIFQHGFRQALSCETQLVLT 1125
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 356 EGMMPNL---LHVIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSH 189
EG +P + V+PV S D + S +C ++LSH + H L A
Sbjct: 71 EGTLPKIWLNAMVVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNIL 129
Query: 188 DRGEHGARSIISCETGLAHT 129
+HG R +SCET L T
Sbjct: 130 SIFQHGFRQALSCETQLVLT 149
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 263 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 129
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 412 PSPQGQQREDDPDHVRNIQHARHVRRHPSR 501
P+P+ R D+P V A HV HPSR
Sbjct: 266 PTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 410 SLSEQDWVFLGGDTQLIVEGMMPNLLHVI 324
SL++Q+W + D Q+IVEG M N ++I
Sbjct: 1332 SLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 204 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 262
Query: 152 CETGLAHT 129
CET L T
Sbjct: 263 CETQLVLT 270
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 VIPVSDDSVFDGVFEGQDTSFA-LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIIS 153
V+PV S D + S +C ++LSH + H L A +HG R +S
Sbjct: 2 VVPVHKKSAKDQPQNYRPISLTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALS 60
Query: 152 CETGLAHT 129
CET L T
Sbjct: 61 CETQLVLT 68
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -1
Query: 269 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 105
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 104 GNFFVAHLE 78
G V L+
Sbjct: 521 GQVDVLLLD 529
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 181 GNTARGASSPAKPALHIPEPLSTT 110
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 316 LTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLP---SPQGQQREDDPDHVRNIQHARHVR 486
L M WR S C + C RLP + QGQQ + P + Q A +
Sbjct: 613 LAAMAWRPCPPSNSCYDCGEEGHFARECPKRLPPTSNQQGQQNQRRPPQAQQQQKAGNGS 672
Query: 487 RHPSRALAVRV 519
P A+ V++
Sbjct: 673 PLPQPAIKVKL 683
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 181 GNTARGASSPAKPALHIPEPLSTT 110
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 196 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 86
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 373 SPPRNTQSCSLRLPSPQGQQREDDPDHVRNIQHARHVRRH 492
SPP +S S R PSP ++R P R R V RH
Sbjct: 559 SPPPRRRSPSPRRPSPSPRRRSTSPS--RKSPPPRRVHRH 596
>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
Length = 520
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 322 GMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPSPQGQQREDDPDHV 456
G T FG M PR+ Q C LRLP P+G Q H+
Sbjct: 448 GDTLATFGHCLVGMENDQVPRSGQRC-LRLPPPRGAQNRRGTHHI 491
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 263 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 129
LC + ++LSH + H L +HG R +SCET L T
Sbjct: 857 LCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 252 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 106
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 258 PHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 88
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 349 IPSTMSCVSPPRNT--QSCSLRLPSPQ 423
+ S C+SPP+NT Q C +L SP+
Sbjct: 807 LESPKQCISPPKNTLKQVCPSQLESPK 833
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 349 IPSTMSCVSPPRNT--QSCSLRLPSPQ 423
+ S C+SPP+NT Q C +L SP+
Sbjct: 829 LESPKQCISPPKNTLKQVCPSQLESPK 855
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 349 IPSTMSCVSPPRNT--QSCSLRLPSPQ 423
+ S C+SPP+NT Q C +L SP+
Sbjct: 873 LESPKQCISPPKNTLKQVCPSQLESPK 899
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 206
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 704
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 352 PSTMSCVSPPRNTQSCSLRLPSPQGQQREDDPDHVRNIQ 468
P+ + PP+N + L S +R PDH RN +
Sbjct: 269 PARFQVIDPPKNAKPVFGELHSKPKPERPKIPDHNRNTE 307
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 450 SCSKHSTRPPCTSPSKPC 503
+C H+ R P T+PS PC
Sbjct: 359 ACYSHARREPSTAPSLPC 376
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 274 PLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 143
P C S P F +P P W LP+ E N G SS A P
Sbjct: 2225 PRAECESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,122
Number of Sequences: 59808
Number of extensions: 455806
Number of successful extensions: 1458
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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