Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308D02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 205 1e-53
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 205 1e-53
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 205 2e-53
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 205 2e-53
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 204 2e-53
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 204 2e-53
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 200 5e-52
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 200 5e-52
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 200 5e-52
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 192 2e-49
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 141 3e-34
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 110 5e-25
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 102 2e-22
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 87 7e-18
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 81 6e-16
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 69 1e-12
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 48 4e-06
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 45 4e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 45 4e-05
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.067
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 29 1.9
At3g12650.1 68416.m01575 expressed protein 29 2.5
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 3.3
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 3.3
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 28 4.4
At2g22330.1 68415.m02649 cytochrome P450, putative similar to cy... 28 4.4
At5g13180.1 68418.m01509 no apical meristem (NAM) family protein... 27 5.8
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 5.8
At3g05750.1 68416.m00646 expressed protein 27 5.8
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 27 5.8
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 27 7.7
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 27 7.7
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 205 bits (501), Expect = 1e-53
Identities = 91/101 (90%), Positives = 96/101 (95%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPV 105
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS 147
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 205 bits (501), Expect = 1e-53
Identities = 91/101 (90%), Positives = 96/101 (95%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPV 105
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 147
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 205 bits (500), Expect = 2e-53
Identities = 91/101 (90%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPV 105
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 147
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 205 bits (500), Expect = 2e-53
Identities = 91/101 (90%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPV 105
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 147
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 204 bits (499), Expect = 2e-53
Identities = 90/101 (89%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPI 105
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS 147
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 204 bits (499), Expect = 2e-53
Identities = 90/101 (89%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPI 105
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS 147
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 200 bits (488), Expect = 5e-52
Identities = 85/101 (84%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPV 105
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 147
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 200 bits (488), Expect = 5e-52
Identities = 85/101 (84%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPV 105
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 147
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 200 bits (488), Expect = 5e-52
Identities = 85/101 (84%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPV 105
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 113 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 147
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 192 bits (467), Expect = 2e-49
Identities = 80/101 (79%), Positives = 95/101 (94%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 272
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ++R
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 273 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
GIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPI 106
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFE+F P+MY+ IQAVLSLY+S
Sbjct: 114 NPKVNREKMTQIMFESFAFPSMYIGIQAVLSLYSS 148
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 141 bits (341), Expect = 3e-34
Identities = 63/96 (65%), Positives = 74/96 (77%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E + R ILTL
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 288 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
K P+EHGIV NWDDMEKIWH+TFYNELRV PEEHPV
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPV 94
Score = 57.6 bits (133), Expect = 5e-09
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK NREKMTQIMFE+F+ PAMYV++Q+VL LY+S
Sbjct: 102 NPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSS 136
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 110 bits (265), Expect = 5e-25
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +3
Query: 216 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
MVGM + D +VGD+A+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPV
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
+PK +REKMTQIMFETF P+MY+ +QA LSL+AS
Sbjct: 68 NPKADREKMTQIMFETFAVPSMYIGMQAALSLHAS 102
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 102 bits (244), Expect = 2e-22
Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 281
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+ R L
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 282 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 386
+ YP+ +GIV NWDDME +W H FYNEL++ P +
Sbjct: 67 DINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSD 101
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517
+P NREKM + MFE +N +++ IQAVL+LYA
Sbjct: 112 NPSKNREKMIETMFEKYNFAGVFIQIQAVLTLYA 145
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 87.0 bits (206), Expect = 7e-18
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 16/117 (13%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------------M 227
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG G+ +
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEK 64
Query: 228 GQKDSYVGDEAQS-KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 395
G++ Y G +A + +R + + P + GIVT+WD ++ +W H F N L + P EHP+
Sbjct: 65 GKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPM 121
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 80.6 bits (190), Expect = 6e-16
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 22/123 (17%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--------VGMGQKDS-- 242
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G M +DS
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKT 64
Query: 243 -----------YVGDEAQS-KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 386
YVG +A S +R + + PI+ GIV++WD ++ IW H F + L + P E
Sbjct: 65 ESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTE 124
Query: 387 HPV 395
HP+
Sbjct: 125 HPM 127
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 431 REKMTQIMFETFNTPAMYVAIQAVLSLYAS 520
REK ++MFE + PA+++A VL+ +A+
Sbjct: 140 REKAAELMFEKYKVPALFMAKNPVLTSFAT 169
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 69.3 bits (162), Expect = 1e-12
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 21/116 (18%)
Frame = +3
Query: 105 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-----------------RPRHQ-GVMVGMG 230
A+V+DNG+G K GFAG+ P + P++V + +H GV +
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADL- 66
Query: 231 QKDSYVGDEAQSK-RGILT--LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 389
D Y+GDEA +K R T L YPIEHG V +WD ME+ W +N LR PE+H
Sbjct: 67 --DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDH 120
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 419 PKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517
P +RE +I+FETFN P +Y+A+ +VL+L A
Sbjct: 131 PPESREYTGEILFETFNVPGLYIAVNSVLALAA 163
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+V+DNG G+ KAG G+ P V P+ + +P + + + DE +
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT-LSDEIDLTSA--AV 61
Query: 288 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 380
+ PI+ G + N D +IW H F + L +AP
Sbjct: 62 RRPIDRGYLINSDLQREIWSHLFTSLLHIAP 92
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 419 PKXNREKMTQIMFETFNTPAMYVAIQAVLSLYA 517
PK RE++ Q+MFETFN Y + QAVLSLYA
Sbjct: 100 PKAIREQLVQLMFETFNVSGFYASEQAVLSLYA 132
Score = 39.5 bits (88), Expect = 0.001
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 105 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 281
ALVVD GS KAG A D +P + PS + R MV G + D + +
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDV 53
Query: 282 TLKYPIEHGIVTNWDDMEKIWHHTFYNEL 368
TL PIE G++ +WD ME + + Y L
Sbjct: 54 TLD-PIERGLIRDWDAMEDLLRYVVYTGL 81
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 108 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 287
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD S
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGDLDPSMMKYFDC 77
Query: 288 -----KYPIEHGIVTNWDDMEKIWHHTF 356
+ P + +V ++ ME I + F
Sbjct: 78 TRSGPRSPFDSNVVYQFEIMEYILDYAF 105
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 416 HPKXNREKMTQIMFETFNTPAMYVAIQAVLS 508
+P +R KM +++FET+ PA+ + A S
Sbjct: 127 NPVQSRSKMAELLFETYGVPAVAFGVDAAFS 157
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 229 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 92
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 349 IPSTMSCVSPPRNTQSCSLRLPSPQGQQREDDPDHVRN 462
IPS+ + VSPP +T + + +P G RE +P++ N
Sbjct: 288 IPSSPATVSPPTSTPALA-AIPKSIGSNRETEPNNNSN 324
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 416 EGSLSEQDWVFLGGDTQLIVEGMMPNL 336
EG E+D LG +T+ ++EGMM N+
Sbjct: 100 EGPTVERDLSALGNETRQVLEGMMKNM 126
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 252 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 380
D A L++KY + H I + W + +IW L+ P
Sbjct: 169 DAAGEALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 252 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 380
D A L++KY + H I + W + +IW L+ P
Sbjct: 169 DAAGEALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 340 IFSMSSQLVTIPCSMGYLRVRIPLLLCASS 251
IFS SS+LVT P S+ +R R ++L SS
Sbjct: 10 IFSSSSRLVTTPSSVFPIRQRRRIILVTSS 39
>At2g22330.1 68415.m02649 cytochrome P450, putative similar to
cytochrome P450 79B2 (SP:O81346) [Arabidopsis thaliana]
Length = 543
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 332 HVIPVSDDSVFDGVFEGQDTSFALCLISYIRVLLSH 225
HVIPV+ + +F+ QD FA ++Y + +LS+
Sbjct: 104 HVIPVTCPKIAREIFKQQDALFASRPLTYAQKILSN 139
>At5g13180.1 68418.m01509 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
hypothetical protein SENU5, senescence up-regulated -
Lycopersicon esculentum, EMBL:Z75524
Length = 252
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 319 TGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPSPQGQQREDDPDHVRNIQH 471
T + + S S + P +N C + L G + +DD RN++H
Sbjct: 129 TDWIMHEYRLSSSPPSSMGPTQNWVLCRIFLKKRAGNKNDDDDGDSRNLRH 179
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 205 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 83
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At3g05750.1 68416.m00646 expressed protein
Length = 798
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 93 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDEAQSK 269
++V ++V+NG+ K GF A ++ S+ + + G +++ V + + K
Sbjct: 386 KKVNKVLVENGTTTKKPGFTATSAKKSTSSSLSRKKNLSRSKKPANGVQEAGVNSDKRIK 445
Query: 270 RG--ILTLKYPIEHGIVTNWDDMEK 338
+G ++ ++ G+ T DD +K
Sbjct: 446 KGEKVIKCNITVDGGLKTGDDDRKK 470
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 443 SSSLCXPWGEGSLSEQDWVFLGG 375
+++ PWGE +L+ +D + LGG
Sbjct: 133 TNTFVFPWGEATLTLEDMIVLGG 155
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 391 GCSSGATRSSL*-KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASSPT*ESF 233
GC G T++ L C+ +S+ + TIP + Y + PL LC T + +
Sbjct: 454 GCKRGLTKNRLQCSTLCE-YSICYECATIPSELHYKYDKHPLTLCYGEDTDDKY 506
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 349 IPSTMSCVSPPRNTQSCSLRLPSP 420
IP+T+ PP QS SL LPSP
Sbjct: 187 IPTTIVLSLPPPPPQSLSLSLPSP 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,505
Number of Sequences: 28952
Number of extensions: 294727
Number of successful extensions: 919
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -