Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    48   5e-06
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680...    27   9.1  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +2

Query: 5   RRPVPM----NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVS 172
           RRP P     +  + V  D +SFPSGH+SRA L++  L    +        L  W  S S
Sbjct: 106 RRPRPAYNAADMYVAVAADHWSFPSGHSSRAFLVAAFL----AAGGFPREALFLWAASTS 161

Query: 173 ISRVLAERHYLLDSXXXXXXXXLEGLFMSLI 265
            SRVL  RHY+LD          E    SL+
Sbjct: 162 ASRVLLGRHYVLDVVAGACLGVFEAWLSSLL 192


>10_08_0663 -
           19666476-19667017,19667664-19667755,19668039-19668095,
           19668304-19668447,19668567-19668613,19668733-19668791,
           19668975-19669045,19669274-19669341,19669431-19669598,
           19669885-19669944,19670075-19670251
          Length = 494

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 228 VLEFLKVSSCPSYGCPKVHLLVFCHHCLMKN*MVEN 335
           ++ F K+ S P+ G      L FC+ C++    V++
Sbjct: 354 IMSFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDS 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,404
Number of Sequences: 37544
Number of extensions: 258195
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)