BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C12f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 48 5e-06 10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 27 9.1 >02_05_0213 + 26815889-26816475,26817718-26817788,26817985-26818073, 26818910-26818991,26819089-26819204,26819290-26819451, 26819531-26819680,26819969-26820037,26820375-26820491 Length = 480 Score = 48.0 bits (109), Expect = 5e-06 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Frame = +2 Query: 5 RRPVPM----NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVS 172 RRP P + + V D +SFPSGH+SRA L++ L + L W S S Sbjct: 106 RRPRPAYNAADMYVAVAADHWSFPSGHSSRAFLVAAFL----AAGGFPREALFLWAASTS 161 Query: 173 ISRVLAERHYLLDSXXXXXXXXLEGLFMSLI 265 SRVL RHY+LD E SL+ Sbjct: 162 ASRVLLGRHYVLDVVAGACLGVFEAWLSSLL 192 >10_08_0663 - 19666476-19667017,19667664-19667755,19668039-19668095, 19668304-19668447,19668567-19668613,19668733-19668791, 19668975-19669045,19669274-19669341,19669431-19669598, 19669885-19669944,19670075-19670251 Length = 494 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = +3 Query: 228 VLEFLKVSSCPSYGCPKVHLLVFCHHCLMKN*MVEN 335 ++ F K+ S P+ G L FC+ C++ V++ Sbjct: 354 IMSFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDS 389 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,485,404 Number of Sequences: 37544 Number of extensions: 258195 Number of successful extensions: 505 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 492 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 504 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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