BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C12f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 47 8e-06 SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 27 9.4 >SB_39600| Best HMM Match : Sushi (HMM E-Value=0) Length = 1368 Score = 47.2 bits (107), Expect = 8e-06 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +2 Query: 2 RRRPV--PMNKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSI 175 R RPV + + V D FSFPSGH++RA +++ I + S+ + W +++++ Sbjct: 114 RSRPVYNAQDMFVTVSVDNFSFPSGHSTRAAMMAGICSVL-TPSVFGKALVYTWALAIAM 172 Query: 176 SRVLAERHYLLDSXXXXXXXXLEGLFMSLIW 268 SRV+ RH++ D + L + IW Sbjct: 173 SRVMLGRHHVSDVVCGALIGWAQYLLIVKIW 203 >SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 385 Score = 27.9 bits (59), Expect = 5.4 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 180 GYWLNVTIYWTA*EVWVLEFLKVSSCPSYGCPK 278 GYW V I +T E+W L +K P+Y K Sbjct: 227 GYWEVVPISYTMVEIWELLKIKFFGTPNYARAK 259 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 27.1 bits (57), Expect = 9.4 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = +3 Query: 234 EFLKVSSCPSYGCPK--VHLLVFCHH 305 E + V+SCPSY C K H F HH Sbjct: 938 ETVCVTSCPSYCCKKSLAHKKSFLHH 963 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,420,617 Number of Sequences: 59808 Number of extensions: 290620 Number of successful extensions: 532 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 481 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 531 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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