Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       47   8e-06
SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    27   9.4  

>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +2

Query: 2   RRRPV--PMNKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSI 175
           R RPV    +  + V  D FSFPSGH++RA +++ I     + S+     +  W +++++
Sbjct: 114 RSRPVYNAQDMFVTVSVDNFSFPSGHSTRAAMMAGICSVL-TPSVFGKALVYTWALAIAM 172

Query: 176 SRVLAERHYLLDSXXXXXXXXLEGLFMSLIW 268
           SRV+  RH++ D          + L +  IW
Sbjct: 173 SRVMLGRHHVSDVVCGALIGWAQYLLIVKIW 203


>SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 GYWLNVTIYWTA*EVWVLEFLKVSSCPSYGCPK 278
           GYW  V I +T  E+W L  +K    P+Y   K
Sbjct: 227 GYWEVVPISYTMVEIWELLKIKFFGTPNYARAK 259


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 234  EFLKVSSCPSYGCPK--VHLLVFCHH 305
            E + V+SCPSY C K   H   F HH
Sbjct: 938  ETVCVTSCPSYCCKKSLAHKKSFLHH 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,617
Number of Sequences: 59808
Number of extensions: 290620
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)