Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.     27   6.2  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   RRRPVPM-NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSIS 178
           R RP+   +KL+E   D +SFPSGH+SRA ++  ++ Y  + + ++  P + + + V +S
Sbjct: 88  RERPIKTYSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVVGLS 144

Query: 179 RVLAERHYLLDSXXXXXXXXLEGLFMSLI 265
           RV   RHY+ D         LE   M  I
Sbjct: 145 RVALGRHYITDVLAGIFIGYLEARLMLTI 173


>Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical
           protein K08H2.1 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 103 NERDEHSPACMSGWE*ELIRTNFHELIH 20
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 70  NEDQDHAQRILTAWDVQFIRTNSAILLH 97


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 199
           R+ L+SFIL+Y D++S I    L  W+ V++++ R LA ++
Sbjct: 99  RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 199
           R+ L+SFIL+Y D++S I    L  W+ V++++ R LA ++
Sbjct: 99  RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138


>AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 103 NERDEHSPACMSGWE*ELIRTNFHELIH 20
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 66  NEDQDHAQRILTAWDVQFIRTNSAILLH 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,527
Number of Sequences: 27780
Number of extensions: 229504
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)