BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C12f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical pr... 50 1e-06 Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical pr... 27 6.2 AL023816-6|CAA19435.1| 341|Caenorhabditis elegans Hypothetical ... 27 6.2 AL022274-3|CAA18359.1| 341|Caenorhabditis elegans Hypothetical ... 27 6.2 AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. 27 6.2 >U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical protein T13C5.6 protein. Length = 186 Score = 49.6 bits (113), Expect = 1e-06 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Frame = +2 Query: 2 RRRPVPM-NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSIS 178 R RP+ +KL+E D +SFPSGH+SRA ++ ++ Y + + ++ P + + + V +S Sbjct: 88 RERPIKTYSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVVGLS 144 Query: 179 RVLAERHYLLDSXXXXXXXXLEGLFMSLI 265 RV RHY+ D LE M I Sbjct: 145 RVALGRHYITDVLAGIFIGYLEARLMLTI 173 >Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical protein K08H2.1 protein. Length = 176 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 103 NERDEHSPACMSGWE*ELIRTNFHELIH 20 NE +H+ ++ W+ + IRTN L+H Sbjct: 70 NEDQDHAQRILTAWDVQFIRTNSAILLH 97 >AL023816-6|CAA19435.1| 341|Caenorhabditis elegans Hypothetical protein T05G11.7 protein. Length = 341 Score = 27.5 bits (58), Expect = 6.2 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Frame = +2 Query: 80 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 199 R+ L+SFIL+Y D++S I L W+ V++++ R LA ++ Sbjct: 99 RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138 >AL022274-3|CAA18359.1| 341|Caenorhabditis elegans Hypothetical protein T05G11.7 protein. Length = 341 Score = 27.5 bits (58), Expect = 6.2 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Frame = +2 Query: 80 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 199 R+ L+SFIL+Y D++S I L W+ V++++ R LA ++ Sbjct: 99 RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138 >AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. Length = 172 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 103 NERDEHSPACMSGWE*ELIRTNFHELIH 20 NE +H+ ++ W+ + IRTN L+H Sbjct: 66 NEDQDHAQRILTAWDVQFIRTNSAILLH 93 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,652,527 Number of Sequences: 27780 Number of extensions: 229504 Number of successful extensions: 421 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 420 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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