Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /...    32   0.27 
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto...    29   1.4  
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa...    28   4.4  

>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 213

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 27/111 (24%)
 Frame = +2

Query: 2   RRRPVPMNKLME--VGPDKFSFPSGHASRAVLISFILIYFDS------------------ 121
           R RP   +  M   V  D +SFPSGHASR   ++  + +F +                  
Sbjct: 89  RARPAYNHPSMSAAVSADHYSFPSGHASRVFFVAASVHFFSAAAEASMTGPSYSFLDGWI 148

Query: 122 -------VSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXXXLEGLF 253
                  V +     +  W    +ISR+L  RHY+LD         +E LF
Sbjct: 149 RDHNDGDVKVEVVVVVWIWATVTAISRILLGRHYVLDVAAGAFLGIVEALF 199


>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
           cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
          Length = 1483

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 358 CIKHLESLNDSNMLNIN*YYFKIVKYCFMNMTR 456
           CI    S  DS  +NIN   + IV + F+N+ R
Sbjct: 556 CILQFYSQLDSKQININHRIYSIVSWAFLNLNR 588


>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 316

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 231 LEFLK-VSSCPSYGCPKVHLLVFCHHCLMKN*MVENTMYKHKKM 359
           LEF K V +CPS+GC        C   L    +   TMYK   M
Sbjct: 192 LEFAKPVVNCPSFGCNSELQREDCEGVLKPKQLDRMTMYKKASM 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,956
Number of Sequences: 28952
Number of extensions: 207332
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)