Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308C11f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 224 1e-57
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 124 2e-27
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 111 7e-24
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 97 2e-19
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 93 5e-18
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 84 2e-15
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 77 2e-13
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 74 2e-12
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 4e-11
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 69 5e-11
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 68 1e-10
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 66 6e-10
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 63 4e-09
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 62 6e-09
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 62 6e-09
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 61 2e-08
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 60 2e-08
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 60 3e-08
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 60 4e-08
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 59 5e-08
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 58 9e-08
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 58 9e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 54 3e-06
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 1e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 2e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 4e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 7e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.001
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.004
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.006
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.006
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.011
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.011
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 42 0.011
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 42 0.011
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 41 0.015
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.015
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.020
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.020
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.020
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.026
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.035
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.035
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.035
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.035
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.035
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.035
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.035
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.060
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.080
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 38 0.14
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.14
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.14
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.14
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.18
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.24
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 37 0.24
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 37 0.24
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.24
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.24
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ... 37 0.32
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 37 0.32
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.32
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.43
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.43
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.43
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.56
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.56
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.74
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.74
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 0.98
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.3
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.3
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.3
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 1.7
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 1.7
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 1.7
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.3
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo... 33 3.0
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.0
UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome s... 33 5.2
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 33 5.2
UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1; ... 32 6.9
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 6.9
UniRef50_Q6C1H1 Cluster: Yarrowia lipolytica chromosome F of str... 32 6.9
UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1; ... 32 9.2
UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus ... 32 9.2
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 32 9.2
UniRef50_P52920 Cluster: Cytosolic Fe-S cluster assembling facto... 32 9.2
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 224 bits (547), Expect = 1e-57
Identities = 106/117 (90%), Positives = 113/117 (96%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
KDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHH
Sbjct: 66 KDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHH 125
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 60
AR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQ
Sbjct: 126 ARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 124 bits (298), Expect = 2e-27
Identities = 65/118 (55%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
KDPKRL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHH
Sbjct: 65 KDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHH 124
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLRKGQ 60
AR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN G+
Sbjct: 125 ARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 111 bits (268), Expect = 7e-24
Identities = 64/123 (52%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGL 249
KDP+ LFE N LLR+LV G+L E +MK + GL+I F E++LQTQVF+ L
Sbjct: 66 KDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVL 124
Query: 248 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 69
KSI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN++
Sbjct: 125 DKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVK 184
Query: 68 KGQ 60
KG+
Sbjct: 185 KGR 187
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 97.5 bits (232), Expect = 2e-19
Identities = 51/122 (41%), Positives = 81/122 (66%)
Frame = +3
Query: 57 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 236
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 237 DGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSLGVLLL 416
+ L Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL VL +
Sbjct: 70 NRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFV 129
Query: 417 EG 422
G
Sbjct: 130 SG 131
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 92.7 bits (220), Expect = 5e-18
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
K+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHH 115
Query: 230 ARILIRQRHI 201
+LIRQ HI
Sbjct: 116 DHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 83.8 bits (198), Expect = 2e-15
Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 8/101 (7%)
Frame = -1
Query: 386 GNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLAKS+HH
Sbjct: 70 GRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHH 129
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 108
AR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 130 ARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 77.0 bits (181), Expect = 2e-13
Identities = 41/104 (39%), Positives = 64/104 (61%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI
Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIA 132
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 66
+ + V P +IV IDF SPF P + +N+++
Sbjct: 133 IGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENVQQ 176
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 73.7 bits (173), Expect = 2e-12
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = -1
Query: 389 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 210
E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVH 129
Query: 209 RHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 84
HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 130 GHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 4e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = -1
Query: 326 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 147
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 146 GKHIDFSLKS 117
I FSL S
Sbjct: 155 EIFISFSLNS 164
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 69.3 bits (162), Expect = 5e-11
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = -1
Query: 389 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 210
E L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I
Sbjct: 68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVH 126
Query: 209 RHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 114
HI V +VV+ PS++V+ + I+F SP
Sbjct: 127 GHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = -1
Query: 368 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 189
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAG 137
Query: 188 QVVNIPSFIV 159
+ V P F+V
Sbjct: 138 RRVTSPGFLV 147
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 65.7 bits (153), Expect = 6e-10
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = -1
Query: 389 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 210
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITH 136
Query: 209 RHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 114
HI + + IP +V + HI + SP
Sbjct: 137 GHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 62.9 bits (146), Expect = 4e-09
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = -1
Query: 365 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 186
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 185 VVNIPSFIVRLDSGKHIDFSLKSP 114
+N PS++V L I + SP
Sbjct: 137 KINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 62.5 bits (145), Expect = 6e-09
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI
Sbjct: 69 EDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQ 127
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 114
AR I HI + + + +P ++V + + + SP
Sbjct: 128 ARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 62.5 bits (145), Expect = 6e-09
Identities = 34/86 (39%), Positives = 50/86 (58%)
Frame = -1
Query: 386 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 207
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR +
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHG 125
Query: 206 HIRVRKQVVNIPSFIVRLDSGKHIDF 129
H+ V V PS+ V + + F
Sbjct: 126 HVTVDGSRVTEPSYTVPVSEENTLAF 151
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 60.9 bits (141), Expect = 2e-08
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHIT 131
Query: 197 VRKQVVNIPSFIVRLDSGKHIDF 129
+ + +N P +V ++IDF
Sbjct: 132 LNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 60.5 bits (140), Expect = 2e-08
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI
Sbjct: 78 LIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIA 136
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSP 114
+ + V IP + V + I ++ SP
Sbjct: 137 IGGRRVTIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 60.1 bits (139), Expect = 3e-08
Identities = 33/61 (54%), Positives = 37/61 (60%)
Frame = +1
Query: 112 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSK 291
+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSK
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSK 117
Query: 292 K 294
K
Sbjct: 118 K 118
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 59.7 bits (138), Expect = 4e-08
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S AR L+ HI
Sbjct: 78 LISHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIA 136
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSPF 111
+ + V +P ++V I ++ KSPF
Sbjct: 137 IGGRRVTVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.3 bits (137), Expect = 5e-08
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -1
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 75
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 67
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 58.4 bits (135), Expect = 9e-08
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I
Sbjct: 71 IIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIA 129
Query: 197 VRKQVVNIPSFIV 159
V + V+IP ++V
Sbjct: 130 VNMKRVSIPGYMV 142
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 58.4 bits (135), Expect = 9e-08
Identities = 36/88 (40%), Positives = 48/88 (54%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHIT 134
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSP 114
V + V +P +V I + SP
Sbjct: 135 VNGRRVTVPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -1
Query: 344 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 237
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 173 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 69
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 53.6 bits (123), Expect = 3e-06
Identities = 35/89 (39%), Positives = 48/89 (53%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
LLR L RIG++ K LD VL L++ D L RRLQT V K + + AR + HI
Sbjct: 73 LLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHIT 131
Query: 197 VRKQVVNIPSFIVRLDSGKHIDFSLKSPF 111
+ +VV IPS+ V ++ I + S F
Sbjct: 132 ISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 132
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 131 FSLKS 117
+S
Sbjct: 143 IKPES 147
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.0 bits (109), Expect = 1e-04
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = -1
Query: 350 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 171
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 170 SFIVRL 153
SF V++
Sbjct: 126 SFRVKV 131
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 2e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = -1
Query: 314 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -1
Query: 317 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 7e-04
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = -1
Query: 338 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 158 R 156
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = -1
Query: 338 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 158 R 156
+
Sbjct: 113 K 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = -1
Query: 317 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 138
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 137 IDFSLKSPFGGG 102
I KS G
Sbjct: 146 ISLREKSRANAG 157
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = -1
Query: 317 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 138
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 137 IDFSLKS 117
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.004
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 132
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 131 FSLKS 117
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.006
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -1
Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.011
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = -1
Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 162
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 161 VR 156
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.011
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 41.5 bits (93), Expect = 0.011
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
K P R LL +L +G++ K L+ + F RRL + + +++++ H
Sbjct: 67 KHPFRTEMSGLLLEKLYVLGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKH 125
Query: 230 ARILIRQRHIRVRKQVVNIPSFIV 159
A +I H+RV VV P+F+V
Sbjct: 126 ATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 41.5 bits (93), Expect = 0.011
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = -1
Query: 407 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 228
DP R LL +L +GVL K D + + RRL + + +A++I A
Sbjct: 68 DPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDA 127
Query: 227 RILIRQRHIRVRKQVVNIPSFIV 159
I Q H+RV ++N P+++V
Sbjct: 128 VKFIEQGHVRVGPNLINDPAYLV 150
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 41.1 bits (92), Expect = 0.015
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
KDP R + +L++L +G++ KQ L + F RRL + K +A+++
Sbjct: 23 KDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVES 81
Query: 230 ARILIRQRHIRVRKQVVNIPSFIV 159
A ++ HIRV ++V P+F+V
Sbjct: 82 AVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.015
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = -1
Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 162
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 161 VRL 153
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.020
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = -1
Query: 347 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 168
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 167 F 165
+
Sbjct: 95 Y 95
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.020
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -1
Query: 212 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 69
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.020
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 132
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 131 FSLKS 117
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.026
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = -1
Query: 317 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.035
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = -1
Query: 338 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 158 R 156
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.035
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.035
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -1
Query: 329 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 162
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.035
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -1
Query: 296 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 153
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.035
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.035
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 132
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 131 F 129
F
Sbjct: 147 F 147
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 39.9 bits (89), Expect = 0.035
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
+D R+ ALL +L +G++ + L+ + F RRL T + K +A+ +
Sbjct: 68 RDQFRVRASAALLDKLYALGLVPTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQA 126
Query: 230 ARILIRQRHIRVRKQVVNIPSFIV 159
A + Q H+RV VV P+F+V
Sbjct: 127 AVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.060
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = -1
Query: 347 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 183
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 182 VNIPSFIV 159
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.080
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 37.9 bits (84), Expect = 0.14
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = -1
Query: 407 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 228
D R+ + RL +GV+ + L + + DF RRL V + + A
Sbjct: 68 DAFRMVLTKRICDRLYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQA 127
Query: 227 RILIRQRHIRVRKQVVNIPSFIV 159
LI+Q HI+V V+ P++IV
Sbjct: 128 ETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.14
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.14
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = -1
Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 162
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 161 V 159
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.14
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.18
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -1
Query: 329 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 150
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 149 S 147
S
Sbjct: 142 S 142
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.1 bits (82), Expect = 0.24
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -1
Query: 155 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR 69
+DS KH DFSL SP G R +VKRK L+
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLK 29
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 37.1 bits (82), Expect = 0.24
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEK--QMKLDY--VLGLK--IEDFLERRLQTQVFKAGL 249
K + F N L RL R L+ K Q KL Y G + I LE+R+ + ++G
Sbjct: 98 KKQQEPFTQNLTLHRLFRKFYLNLKLKQFKLLYKKYKGNEKVIIQQLEKRVDMVLLRSGF 157
Query: 248 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 153
+S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 158 VRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 37.1 bits (82), Expect = 0.24
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 377 LLRRLVRI----GVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 210
L RRL RI GV+D Q LD + L L RRL + K + + I ++Q
Sbjct: 73 LTRRLSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQ 132
Query: 209 RHIRVRKQVVNIPSFIV 159
H+RV VV P+ V
Sbjct: 133 GHVRVGPNVVVNPALHV 149
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.24
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.24
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -1
Query: 317 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 275
Score = 36.7 bits (81), Expect = 0.32
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 413 PRGGARXPIRPIVSRIT 463
PRGGAR PIRPIVSRIT
Sbjct: 259 PRGGARYPIRPIVSRIT 275
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 36.7 bits (81), Expect = 0.32
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = -1
Query: 407 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 228
DP R L+ RL +GV+ K KL + + F ERRL + + + S A
Sbjct: 67 DPVRTTITKKLVGRLYSVGVI--KNRKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDA 124
Query: 227 RILIRQRHIRVRKQVVNIPSFIV 159
+ H+R+ +VV PS I+
Sbjct: 125 TRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.7 bits (81), Expect = 0.32
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = -1
Query: 371 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 192
R+LVR V K++K G + LE RL VF+ +A +I AR LI HI +
Sbjct: 85 RQLVRY-VQQAKKIKGS--TGRVLLRLLEMRLDNIVFRLHMAPTIKAARQLISHGHILIN 141
Query: 191 KQVVNIPSF 165
K+ V IPS+
Sbjct: 142 KKKVTIPSY 150
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 36.3 bits (80), Expect = 0.43
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -1
Query: 293 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 126
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.43
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.43
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.56
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 176 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 280
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.56
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 0.74
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -1
Query: 296 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 153
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.74
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 35.1 bits (77), Expect = 0.98
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = -1
Query: 377 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 198
+L +L +G+++EK + L V + +E F +RRL T + +A + A + H+R
Sbjct: 124 ILDKLYAMGLINEK-LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVR 182
Query: 197 VRKQVVNIPSFIVRLD 150
V + P+F+V D
Sbjct: 183 VGTSQIRDPAFLVPRD 198
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.3
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -1
Query: 311 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 165
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -1
Query: 308 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 129
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 128 S 126
+
Sbjct: 135 A 135
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 34.7 bits (76), Expect = 1.3
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -1
Query: 293 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 249 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 154
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 1.7
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 129
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 1.7
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.3
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = -1
Query: 302 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 141
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
Eukaryota|Rep: beta-galactosidase - Entamoeba
histolytica HM-1:IMSS
Length = 86
Score = 33.5 bits (73), Expect = 3.0
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 467 HWPXFYNVVTGKT 505
HWP FYNVVTGKT
Sbjct: 5 HWPSFYNVVTGKT 17
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.0
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF14665, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 785
Score = 32.7 bits (71), Expect = 5.2
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -1
Query: 374 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR--ILIRQRHI 201
++++V+I +L + K V G + + +R L L + + H R L ++
Sbjct: 385 MKKMVQIPMLRPWEAKNTKVFGASLSELQDRGLVEDGVPVLLRRLVEHLRKHALQQEGLF 444
Query: 200 RVRKQVVNIPSFIVRLDSGKHIDFS 126
RV V + + RL+SG+H+D S
Sbjct: 445 RVNGNVRAVGTLKQRLESGEHVDLS 469
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 32.7 bits (71), Expect = 5.2
Identities = 21/95 (22%), Positives = 45/95 (47%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
+D R+ + R+ ++G+++ Q L + + +RRL + + I
Sbjct: 67 EDKVRIDLTKQFVDRVYKLGIIETPQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISE 124
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 126
A L+RQ H+R+ VV P+ +V + +I+++
Sbjct: 125 ADKLVRQGHVRIGPDVVTNPATLVSKEMEDYINWA 159
>UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1;
Xanthomonas oryzae pv. oryzae|Rep: Putative
uncharacterized protein - Xanthomonas oryzae pv. oryzae
Length = 223
Score = 32.3 bits (70), Expect = 6.9
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = -1
Query: 404 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL--QTQVFKAGLAKSIHH 231
P+ + + A + +VR GV D ++ + G F+ L +T++FKAG+A+S
Sbjct: 125 PQLIADAQAAVDEVVRRGVTDRARIAIG---GHSYGAFMTANLLARTRLFKAGIARSGMS 181
Query: 230 A---RILIRQRHIRVRKQVVNIPSFIVRLDSGKH 138
A R+L R R RKQ V + IV G H
Sbjct: 182 AIPRRLLCRPSVDRRRKQCVANATRIVASHIGAH 215
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 6.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 284 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 159
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_Q6C1H1 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 494
Score = 32.3 bits (70), Expect = 6.9
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +3
Query: 219 QNSGMMDGLRQAS-----FEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGI 383
+ +G +DG + AS E ++T E+L + KH + H+F + Y NT +
Sbjct: 136 KGAGSLDGDKTASKYTDAAESKTIKTVPPEILERRKKHTVITHMFVLSYENTILFALEIY 195
Query: 384 TFEQSLGVLL 413
TF GV L
Sbjct: 196 TFYDPTGVTL 205
>UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05327.1 - Gibberella zeae PH-1
Length = 514
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 111
LERRL T VF+A A S+ AR + ++V + + PS+ + +D K +
Sbjct: 160 LERRLDTAVFRAMFASSVRQARQFVIHGAVKVNGKKMVHPSYALNPGDMFQVDIE-KVLY 218
Query: 110 GGG 102
G G
Sbjct: 219 GTG 221
>UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus
atmophyticus|Rep: Ribosomal protein S4 - Chlorokybus
atmophyticus (Soil alga)
Length = 267
Score = 31.9 bits (69), Expect = 9.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 290 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 156
LERRL + + ++ AR LI + I V + VNI S++++
Sbjct: 94 LERRLDVVLLRLKYCSTLSEARQLISHKKILVNNETVNISSYLLK 138
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 389 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL-QTQVFKAGL-AKSIHHARILI 216
+GN+ L+RIG+LDE+ + + + + +ED + +L ++ F A K+ RI +
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKLFSSKKFNAEQDQKTTAELRIEL 989
Query: 215 RQRHIRVRK 189
Q V+K
Sbjct: 990 CQIQTHVKK 998
>UniRef50_P52920 Cluster: Cytosolic Fe-S cluster assembling factor
NBP35; n=28; Ascomycota|Rep: Cytosolic Fe-S cluster
assembling factor NBP35 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 328
Score = 31.9 bits (69), Expect = 9.2
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 54 ATLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WD-VHNLLADTNMPLPDQNSG 230
AT+S+ +LP D S WR ++ N+L + + WD + L+ DT D++
Sbjct: 145 ATMSIQYMLPEDDSAII---WRGSKK-NLLIKKFLKDVDWDKLDYLVIDTPPGTSDEHIS 200
Query: 231 MMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEF 329
+ +R++ + + TT QEV L + I+F
Sbjct: 201 INKYMRESGIDGALVVTTPQEVALLDVRKEIDF 233
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,901,331
Number of Sequences: 1657284
Number of extensions: 10908773
Number of successful extensions: 32562
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 31522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32553
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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