Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   0.54 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.54 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   2.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.6  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 285 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCP 193
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 285 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCP 193
           A   +A V  W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 270 AGVQSWPGEVHPSCQNFDPAKAYSCPQAS 184
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 505 GFXSHDVVKX--RPVNCNTTHYRANWVPGPPSRRRTPRDCSK 386
           G  S+++V+   +PV   T    +   P PPSR  T   C+K
Sbjct: 383 GGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLCTK 424


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 291 LGASSADAGVQSWPGEVHPSCQNF 220
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 395 ISWGPSPRGGARXPIRPIVSRITIHWPXFYN 487
           IS  P+P        +P+ +   + +P +YN
Sbjct: 336 ISAQPTPSQSPNQIYQPVTNLTNLTYPSYYN 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,506
Number of Sequences: 336
Number of extensions: 2622
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)