Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   203   1e-53
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   201   4e-53
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    46   5e-06
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.42 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.2  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   6.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  203 bits (495), Expect = 1e-53
 Identities = 93/117 (79%), Positives = 106/117 (90%)
 Frame = -1

Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
           KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 60
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  201 bits (491), Expect = 4e-53
 Identities = 92/114 (80%), Positives = 105/114 (92%)
 Frame = -1

Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
           KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 69
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = -1

Query: 407 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 228
           DP RL   N LL +L  +G+L  K    D      +     RRL   + K  +++ +  A
Sbjct: 68  DPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEA 127

Query: 227 RILIRQRHIRVRKQVVNIPSFIV 159
             LI Q H+RV   V+  P+++V
Sbjct: 128 TRLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 303  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 172
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 332 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 201
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 177 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 76
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,569
Number of Sequences: 5004
Number of extensions: 41791
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)