BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C11f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 215 2e-56 U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 35 0.041 Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 1.5 AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.0 U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 2.7 AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 3.5 U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 6.2 U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 6.2 U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 8.1 U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 8.1 AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 8.1 AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 8.1 AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 8.1 AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 27 8.1 >Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical protein F40F8.10 protein. Length = 189 Score = 215 bits (525), Expect = 2e-56 Identities = 101/116 (87%), Positives = 111/116 (95%) Frame = -1 Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231 KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHH Sbjct: 65 KDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHH 124 Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 63 ARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG Sbjct: 125 ARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180 >U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical protein C48B6.2 protein. Length = 183 Score = 34.7 bits (76), Expect = 0.041 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = -1 Query: 293 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117 F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163 >Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical protein F45D3.3 protein. Length = 236 Score = 29.5 bits (63), Expect = 1.5 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = -3 Query: 339 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 169 KTDE A S+ D G +SA A V + P + S NFD K SC C PI Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165 >AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical protein Y49F6B.9 protein. Length = 382 Score = 29.1 bits (62), Expect = 2.0 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +2 Query: 176 CSQLACGHEYAFAGSKFWHDG 238 C + CG E+ F K WH+G Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172 >U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily assigned gene nameprotein 224 protein. Length = 465 Score = 28.7 bits (61), Expect = 2.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 Query: 173 GCSQLACGHEYAFAGSKFWH 232 GC +L +EY FA K WH Sbjct: 339 GCDELIFANEYTFAEEKSWH 358 >AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic initiation factor protein3.I protein. Length = 327 Score = 28.3 bits (60), Expect = 3.5 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +2 Query: 278 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 412 +DA + Q+S A + + ++H V + E +GH+ + T++W PS Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298 >U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical protein R07E4.1b protein. Length = 986 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/42 (23%), Positives = 28/42 (66%) Frame = -1 Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180 ++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++ Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205 >U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical protein R07E4.1a protein. Length = 1122 Score = 27.5 bits (58), Expect = 6.2 Identities = 10/42 (23%), Positives = 28/42 (66%) Frame = -1 Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180 ++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++ Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341 >U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated protein 70, isoform a protein. Length = 2257 Score = 27.1 bits (57), Expect = 8.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = -3 Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166 +VH QNFD AKA S PQ + EHP I Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810 >U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated protein 70, isoform b protein. Length = 2302 Score = 27.1 bits (57), Expect = 8.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = -3 Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166 +VH QNFD AKA S PQ + EHP I Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810 >AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin protein. Length = 2257 Score = 27.1 bits (57), Expect = 8.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = -3 Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166 +VH QNFD AKA S PQ + EHP I Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810 >AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin protein. Length = 2257 Score = 27.1 bits (57), Expect = 8.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = -3 Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166 +VH QNFD AKA S PQ + EHP I Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810 >AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin protein. Length = 2302 Score = 27.1 bits (57), Expect = 8.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%) Frame = -3 Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166 +VH QNFD AKA S PQ + EHP I Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810 >AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai (rna interference)protein 1, isoform b protein. Length = 582 Score = 27.1 bits (57), Expect = 8.1 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -1 Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 186 EK +Y+ + EDF + + +FK G KS AR +I + V + Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,712,318 Number of Sequences: 27780 Number of extensions: 254133 Number of successful extensions: 751 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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