SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   215   2e-56
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    35   0.041
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.0  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.7  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   3.5  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   8.1  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   8.1  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   8.1  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   8.1  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   8.1  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    27   8.1  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  215 bits (525), Expect = 2e-56
 Identities = 101/116 (87%), Positives = 111/116 (95%)
 Frame = -1

Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
           KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHH 124

Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 63
           ARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 125 ARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 293 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -3

Query: 339 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 169
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 176 CSQLACGHEYAFAGSKFWHDG 238
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 173 GCSQLACGHEYAFAGSKFWH 232
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 278 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 412
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -1

Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -1

Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 186
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,318
Number of Sequences: 27780
Number of extensions: 254133
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -