Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308C11f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 215 2e-56
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 35 0.041
Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.0
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 2.7
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 3.5
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 6.2
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 6.2
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 8.1
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 8.1
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 8.1
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 8.1
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 8.1
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 27 8.1
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 215 bits (525), Expect = 2e-56
Identities = 101/116 (87%), Positives = 111/116 (95%)
Frame = -1
Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHH 124
Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 63
ARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 125 ARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -1
Query: 293 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 117
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163
>Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical
protein F45D3.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -3
Query: 339 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 169
KTDE A S+ D G +SA A V + P + S NFD K SC C PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 176 CSQLACGHEYAFAGSKFWHDG 238
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 173 GCSQLACGHEYAFAGSKFWH 232
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 278 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 412
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = -1
Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = -1
Query: 305 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 180
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -3
Query: 246 EVHPSCQNFDP------AKAYSCPQASCEHPII 166
+VH QNFD AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 341 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 186
EK +Y+ + EDF + + +FK G KS AR +I + V +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,318
Number of Sequences: 27780
Number of extensions: 254133
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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