Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 60  LSLAEVLPLDTSRTTSTEW 116
           LSL  V+ LDT++    EW
Sbjct: 10  LSLVSVVLLDTTQEEKLEW 28


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 LQEVLNLQTKHIIEFHLFFIQYSNTNQ 365
           ++ V N+  K  + F L F+Q  N N+
Sbjct: 42  IRPVQNMTEKVHVNFGLAFVQLINVNE 68


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 SNTNQTT*KGITFEQSLGVLLLEGGPGTQ 437
           SNT++T       E S G  L  G  GTQ
Sbjct: 91  SNTSKTFILSEKLESSDGTSLFRGPEGTQ 119


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 359 EPDDVEGHYLRTISWG 406
           +PD  E  Y+RT+S G
Sbjct: 271 QPDTPEEKYIRTLSKG 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,151
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)