Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   186   8e-48
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   185   1e-47
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    42   3e-04
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.82 
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   3.3  
At1g43730.1 68414.m05028 hypothetical protein                          28   3.3  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   5.8  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   5.8  
At5g28615.1 68418.m03493 hypothetical protein                          27   5.8  
At1g60720.1 68414.m06835 hypothetical protein                          27   7.7  
At1g56020.1 68414.m06431 expressed protein                             27   7.7  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  186 bits (453), Expect = 8e-48
 Identities = 86/116 (74%), Positives = 103/116 (88%)
 Frame = -1

Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
           K+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 63
           AR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  185 bits (451), Expect = 1e-47
 Identities = 86/112 (76%), Positives = 100/112 (89%)
 Frame = -1

Query: 410 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 231
           K P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH
Sbjct: 67  KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 230 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 75
           +R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = -1

Query: 407 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 228
           DP R+   + LL +L  +GV+  ++  L     L +  F  RRL T +     A+    A
Sbjct: 67  DPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEA 125

Query: 227 RILIRQRHIRVRKQVVNIPSFIV 159
              I Q H+RV  + +  P+F+V
Sbjct: 126 VTYIEQGHVRVGPETITDPAFLV 148


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 102 TSTEWRFQREVNVLARVQAHN 164
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 336 TDETRLCAWSED*GLLGASSADAGVQSW 253
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 218 SKFWHDGWTSPGQL 259
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 274 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 167
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 368 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 267
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 218 SKFWHDGWTSPGQL 259
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 224 FWHDGWTSPGQL 259
           FWHD WTS G L
Sbjct: 25  FWHDSWTSLGPL 36


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 188 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 361
           AC      +  KF   GWTSP       + DD  RS     Q  + +  +  PV+ +E
Sbjct: 4   ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,202
Number of Sequences: 28952
Number of extensions: 238670
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)