Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308C08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 145 2e-35
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.76
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.8
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.8
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 1.8
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.1
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.1
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.1
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25) 28 4.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.4
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08) 27 7.1
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.4
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 145 bits (352), Expect = 2e-35
Identities = 64/88 (72%), Positives = 77/88 (87%)
Frame = +2
Query: 2 NSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTG 181
N+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGKTG
Sbjct: 425 NTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTG 484
Query: 182 RVYNVTAHALGVIVNKRVRGRIIPKRIN 265
RVYNVT ALGV+VNK+V+G+I+ KRIN
Sbjct: 485 RVYNVTKRALGVVVNKQVKGKILAKRIN 512
>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 116 DIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSK 295
DI G G+ GMP + G+V ++ A GV++ R ++ + H HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSK 159
Query: 296 CRQDFLKRVKENERLLKEAKAAG 364
F+ R+K E K G
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRG 181
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 308 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 457
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 371 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 463
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 254 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 370
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 193 RDCSCSRCDCQQACSRKDYTEAHQYPC 273
+D +C CD Q C + T HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 10 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 132
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 10 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 132
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 10 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 132
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 10 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 132
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 254 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 433
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 217
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 482 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 541
Query: 218 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 337
V + R R R+ +EH S CR KR K +R
Sbjct: 542 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 581
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 217
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 719 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 778
Query: 218 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 337
V + R R R+ +EH S CR KR K +R
Sbjct: 779 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 818
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 217
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1270 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 1329
Query: 218 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 337
V + R R R+ +EH S CR KR K +R
Sbjct: 1330 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1369
>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
Length = 440
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 217
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 166 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 225
Query: 218 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 337
V + R R R+ +EH S CR KR K +R
Sbjct: 226 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 265
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 254 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 433
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 434 PVLLAPIPYEF 466
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 140 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 280
++G PH+ + G TGR A+ + +K + +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 44 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 217
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1054 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 1113
Query: 218 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 337
V + R R R+ +EH S CR KR K +R
Sbjct: 1114 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1153
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 133 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 228
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 118 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 273
H + WC++ + W + + C S C ACS+ T A Y C
Sbjct: 1804 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 1853
>SB_14940| Best HMM Match : fn2 (HMM E-Value=2.5e-08)
Length = 93
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 118 HQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 273
H + WC++ + W + + C S C ACS+ T A Y C
Sbjct: 30 HNKPWCATTDDFDRDRLWDNMKVDFKPCDASPCRGNGACSQ--VTPAFTYTC 79
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 276 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 410
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 109 HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 222
HC RH ++ + AT+ +PW KD S R C + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315
>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 15/41 (36%)
Frame = +1
Query: 151 ATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 273
A+ S+ W R C C C + S+ T PC
Sbjct: 315 ASDSVRWSVRGGPGHACQCGLCTANGSTSKGKVTRRQNSPC 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,790
Number of Sequences: 59808
Number of extensions: 353163
Number of successful extensions: 1155
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -