Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C07f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23G95 Cluster: Helicase conserved C-terminal domain co...    32   9.2  

>UniRef50_Q23G95 Cluster: Helicase conserved C-terminal domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: Helicase conserved C-terminal domain
            containing protein - Tetrahymena thermophila SB210
          Length = 3523

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 9    LRHFQDKFEYIQATNHNMRTDRRSTE 86
            +R++QDK +YIQ  N N  T ++ST+
Sbjct: 2799 IRNYQDKKQYIQIVNGNSNTQQKSTD 2824


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,356,175
Number of Sequences: 1657284
Number of extensions: 8088529
Number of successful extensions: 14533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14525
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)