Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    31   0.76 
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 178 VLRGERLFGLSDNYLCN*RSVLFGISIGFYCSVDRRSVRILW 53
           ++ G   F L  N+L    +V  G S+ FYC +DR    I W
Sbjct: 357 IVDGHHFFHLPFNFLSGGGTVPEGSSLSFYCYLDRWHGNITW 398


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 249 VTSCPCRLESTETAVLQLGI*LYNIINYSFVSIVS 353
           +  CPC LE TETA  +     Y+I++  F+ ++S
Sbjct: 51  ILKCPCCLEKTETANGEAN---YSILHSRFLEVLS 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,694
Number of Sequences: 59808
Number of extensions: 263273
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)