Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.20 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 306 FLVVKLLFP*IPSDTDKKSHTIHNDTQYCYDFFILLYLHMNGT 178
           F  ++ + P +PSD   K  T+   T+Y    F +L+ +M  T
Sbjct: 273 FAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENT 315


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  RTTICGRTVGLPSNKTR 99
           R  ICG+T  +P+  TR
Sbjct: 93  RCNICGKTFAVPARLTR 109


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 185 FICKYNNIKKS*QYCVSLCIVCDF 256
           F+C+Y        +C +LC  CDF
Sbjct: 735 FLCRYE------AHCFALCHCCDF 752


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 406 IIR*DLFNKYSHSHQR 359
           I+  +L+ KYSH+H++
Sbjct: 61  ILEYELYIKYSHTHEK 76


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 43  KLRTTICGRTVGLPSNKTRC*YQIKRTFNYK 135
           K+ TT  G ++   +    C Y+IK+   YK
Sbjct: 453 KVETTHSGTSLFRINLGIECGYEIKKLLRYK 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,539
Number of Sequences: 438
Number of extensions: 2980
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)