Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    56   4e-09
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   5.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.8  

>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 25/56 (44%), Positives = 32/56 (57%)
 Frame = +3

Query: 93  KQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIPINNIIVG 260
           K F K+    ++RC KPDRKEF  I+ A A            +KLIHIPIN ++VG
Sbjct: 13  KNFYKEGSHFIKRCVKPDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPINKVLVG 68


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 51  NLIMDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIAT 179
           N  MDQ+AK  E  ++     IRL  +    +R+     A AT
Sbjct: 415 NSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRLSAAATAT 457


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 462  LTIGRIGYRAPPRVFFFFFYKNQIIYLF 379
            L  GR  Y+   ++  FFFYKN +I+ F
Sbjct: 1079 LVHGRWDYKRMSQMISFFFYKN-VIWTF 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,538
Number of Sequences: 5004
Number of extensions: 32525
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)