Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-7|CAA98458.1|   68|Caenorhabditis elegans Hypothetical pr...    92   3e-19
U53785-1|AAC47274.1|   68|Caenorhabditis elegans Sec61p gamma ho...    92   3e-19
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   2.7  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   2.7  
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    27   8.1  
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        27   8.1  

>Z74031-7|CAA98458.1|   68|Caenorhabditis elegans Hypothetical
           protein F32D8.6 protein.
          Length = 68

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/68 (63%), Positives = 50/68 (73%)
 Frame = +3

Query: 60  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 239
           MDQ    +EP +QF+KDS RLV+RCTKPDRKE+QKIA+ATA            VKLIHIP
Sbjct: 1   MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 240 INNIIVGS 263
           INNIIVG+
Sbjct: 61  INNIIVGA 68


>U53785-1|AAC47274.1|   68|Caenorhabditis elegans Sec61p gamma
           homolog protein.
          Length = 68

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/68 (63%), Positives = 50/68 (73%)
 Frame = +3

Query: 60  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 239
           MDQ    +EP +QF+KDS RLV+RCTKPDRKE+QKIA+ATA            VKLIHIP
Sbjct: 1   MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 240 INNIIVGS 263
           INNIIVG+
Sbjct: 61  INNIIVGA 68


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = -3

Query: 456 IGRIGYRAPPRVFFFFFYK-------NQIIY-LFTKLYNTVCCK 349
           IG  G+ APP VF FFF+        N +IY +F + +    CK
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSGINPVIYTVFNREFKRGLCK 391


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = -3

Query: 456 IGRIGYRAPPRVFFFFFYK-------NQIIY-LFTKLYNTVCCK 349
           IG  G+ APP VF FFF+        N +IY +F + +    CK
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSGINPVIYTVFNREFKRGLCK 389


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 93  KQFAKDSIRLVRRCTKPDRKEFQKIAIAT 179
           KQF +     VRRC K D K   K   AT
Sbjct: 301 KQFVESGAMAVRRCKKSDLKRIAKATGAT 329


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 93  KQFAKDSIRLVRRCTKPDRKEFQKIAIAT 179
           KQF +     VRRC K D K   K   AT
Sbjct: 301 KQFVESGAMAVRRCKKSDLKRIAKATGAT 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,001
Number of Sequences: 27780
Number of extensions: 188751
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)