Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C04f
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   3.4  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   4.5  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   5.9  

>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 191 TLYNRLINVMKHEIVVNLIFYRVFLHSESYFVRSVFLVFS*ALKVYKNIYYLINSC 24
           TLY R++       + +LIF + +LH +++ + ++   +S  + V  N  Y +  C
Sbjct: 45  TLYRRIVECCAS--LCSLIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLYCLPFC 98


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 369 DFVYFHTKNLLXFYDKSENNHIYW 440
           DFV F T +LL FY KS      W
Sbjct: 684 DFVTFPTSSLLRFYRKSMATESNW 707


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 73  LNTKNTDLTKYDSECKNT 126
           L+TKNT L KYD   K+T
Sbjct: 219 LSTKNTILKKYDGRFKDT 236


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = +2

Query: 188 KYLMRALTIEDLEFIKCIIVINDKINSLLN 277
           +YL+R  ++++L  I C+ + + ++ ++LN
Sbjct: 429 EYLLRLCSLQELHQISCLEMTDSQLAAMLN 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,334
Number of Sequences: 5004
Number of extensions: 29401
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)