BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C04f (481 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 1.5 SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.4 SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 4.5 SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 5.9 >SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 111 Score = 27.1 bits (57), Expect = 1.5 Identities = 14/56 (25%), Positives = 29/56 (51%) Frame = -3 Query: 191 TLYNRLINVMKHEIVVNLIFYRVFLHSESYFVRSVFLVFS*ALKVYKNIYYLINSC 24 TLY R++ + +LIF + +LH +++ + ++ +S + V N Y + C Sbjct: 45 TLYRRIVECCAS--LCSLIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLYCLPFC 98 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 25.8 bits (54), Expect = 3.4 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 369 DFVYFHTKNLLXFYDKSENNHIYW 440 DFV F T +LL FY KS W Sbjct: 684 DFVTFPTSSLLRFYRKSMATESNW 707 >SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 418 Score = 25.4 bits (53), Expect = 4.5 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 73 LNTKNTDLTKYDSECKNT 126 L+TKNT L KYD K+T Sbjct: 219 LSTKNTILKKYDGRFKDT 236 >SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 25.0 bits (52), Expect = 5.9 Identities = 8/30 (26%), Positives = 21/30 (70%) Frame = +2 Query: 188 KYLMRALTIEDLEFIKCIIVINDKINSLLN 277 +YL+R ++++L I C+ + + ++ ++LN Sbjct: 429 EYLLRLCSLQELHQISCLEMTDSQLAAMLN 458 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,679,334 Number of Sequences: 5004 Number of extensions: 29401 Number of successful extensions: 55 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 55 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 184020746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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