Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C02f
         (454 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RI77 Cluster: Bromodomain, putative; n=9; cellular or...    33   2.9  
UniRef50_Q8ID90 Cluster: Putative uncharacterized protein MAL13P...    32   6.6  
UniRef50_Q54IK3 Cluster: Ubiquitin carrier protein; n=1; Dictyos...    32   6.6  
UniRef50_Q54QX5 Cluster: Putative uncharacterized protein; n=3; ...    31   8.7  

>UniRef50_Q7RI77 Cluster: Bromodomain, putative; n=9; cellular
           organisms|Rep: Bromodomain, putative - Plasmodium yoelii
           yoelii
          Length = 3182

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 15  VTFFYRTYFKCTILLTHALQSSNLENLFKTNCYK--YLSNNDNNNKTE*KI*KSHLPNTT 188
           V + Y   ++     TH  ++ N  N+FK N YK  Y + NDNN K E ++  +H+ N +
Sbjct: 651 VVYSYDNNYQNKNNYTHLKENDNEHNIFK-NIYKEYYHNINDNNLKNEIELFGNHIINNS 709

Query: 189 PMPKXEIKMYLTIYTY 236
            +       Y+  Y Y
Sbjct: 710 YIFMVLNYKYIKNYNY 725


>UniRef50_Q8ID90 Cluster: Putative uncharacterized protein
           MAL13P1.307; n=1; Plasmodium falciparum 3D7|Rep:
           Putative uncharacterized protein MAL13P1.307 -
           Plasmodium falciparum (isolate 3D7)
          Length = 137

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 21  FFYRTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNN 140
           FF++TY K T    +  Q S++   F     +Y SNND+N
Sbjct: 22  FFFKTYRKVTYCYKNNFQISSILLKFPPRNKRYFSNNDSN 61


>UniRef50_Q54IK3 Cluster: Ubiquitin carrier protein; n=1;
           Dictyostelium discoideum AX4|Rep: Ubiquitin carrier
           protein - Dictyostelium discoideum AX4
          Length = 585

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 48  TILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE*KI*KSHLPNTTPMPKXEIKMY 218
           T +   A  +S+ ENL  T   K   NN+NNN  + +  K  L +T P+ K ++++Y
Sbjct: 100 TSVPNQASDNSSGENLISTQLNKLDLNNNNNNNQQQQQQKDSLNSTEPI-KKQVELY 155


>UniRef50_Q54QX5 Cluster: Putative uncharacterized protein; n=3;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1496

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 75  SSNLENLFKTNCYKYLSNNDNNNKTE*K--I*KSHLPNTTPMPKXEIKMYLTIY 230
           ++N  N    N    +SNN+NNN +     + KSHL  +TP+P   IK   TI+
Sbjct: 511 NNNNNNNNNNNNNNNISNNNNNNNSNNSRVVNKSHL--STPIPSSSIKSLHTIF 562


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,503,094
Number of Sequences: 1657284
Number of extensions: 6317813
Number of successful extensions: 19187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18943
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)