Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C02f
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   1.8  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   7.2  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    24   9.5  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 12  RVTFFYRTYFKCTILLTHALQSSNLENLFKTNCYKYLSNN 131
           RVTF + T     ILLT+ +Q     N F T  Y+ L N+
Sbjct: 513 RVTFGFNTVGDFVILLTYMIQLQQPLNFFGT-LYRSLQNS 551


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 409 QLYGSIFPVTYNLYSISAY*SIEFAVLVKHHNDVC 305
           +L+  I   TY   +++ +  I+ A  VKH +DVC
Sbjct: 148 ELFHQIVNFTYFSENLARHIIIQVAEAVKHLHDVC 182


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 451 EILNXYRSAEMRPCQLYGSIFPVTYNLY 368
           E+++ Y+S  + P     S+ P+T NLY
Sbjct: 69  ELVSIYQSTGLSPTSSSPSLSPMTPNLY 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,738
Number of Sequences: 5004
Number of extensions: 29094
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)