Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C02f
         (454 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase...    23   6.7  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   6.7  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    22   8.8  

>AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase
           alternate isoform protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 79  DDCKAWVKSIVHLKYVR 29
           DDC A+ K +  L+Y+R
Sbjct: 137 DDCPAFDKIVAGLQYIR 153


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 21  FFYRTYFKCTILLTHALQSSNLENLFKTNCYK 116
           FF + Y K   L  HA  ++  E +   +CY+
Sbjct: 279 FFKKDYQKVQHLALHAFHNTENEAMRAESCYQ 310


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 436 YRSAEMRPCQLYGSIFPVTYNLYSISAY*SIEF-AVLVKHHNDVC*W 299
           YR  + R CQ   SI+  T++LY   +Y    +   L K   ++C W
Sbjct: 422 YRHYQTRRCQRSRSIYFDTHSLY--CSYNRFRYRRYLSKIQRNLCRW 466


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,257
Number of Sequences: 2352
Number of extensions: 7205
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)