BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C02f (454 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical pr... 29 1.2 Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical pr... 27 4.8 Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein ... 27 6.4 Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein ... 27 6.4 Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein. 27 6.4 U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned expre... 27 6.4 Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.4 Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.4 Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.4 >Z81520-1|CAB04223.1| 399|Caenorhabditis elegans Hypothetical protein F31B9.1 protein. Length = 399 Score = 29.5 bits (63), Expect = 1.2 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 30 RTYFK-CTILLTHALQSSNLENLFKTNCYKYLSNNDNNN 143 RTYFK C +++ +A+ L L+ C N DN+N Sbjct: 218 RTYFKYCELIVLYAIPLVFLTTLYSIMCRVLWGNEDNHN 256 >Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical protein K08H2.5 protein. Length = 312 Score = 27.5 bits (58), Expect = 4.8 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 60 THALQSSNLENLFKTNCYK 116 T AL++SNLE +F NC+K Sbjct: 47 TLALKASNLETIFCENCFK 65 >Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein protein. Length = 264 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 30 RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152 R + L+ A+QSS ++L + YKY+S+N + K + Sbjct: 93 RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133 >Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein protein. Length = 228 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 30 RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152 R + L+ A+QSS ++L + YKY+S+N + K + Sbjct: 57 RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 97 >Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein. Length = 264 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 30 RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152 R + L+ A+QSS ++L + YKY+S+N + K + Sbjct: 93 RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133 >U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned expression site protein 1 protein. Length = 264 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 30 RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152 R + L+ A+QSS ++L + YKY+S+N + K + Sbjct: 93 RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133 >Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 26.6 bits (56), Expect = 8.4 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 27 YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143 Y T +K +++ + S N N + YK L++ND NN Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417 >Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 26.6 bits (56), Expect = 8.4 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 27 YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143 Y T +K +++ + S N N + YK L++ND NN Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417 >Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 26.6 bits (56), Expect = 8.4 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 27 YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143 Y T +K +++ + S N N + YK L++ND NN Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,887,436 Number of Sequences: 27780 Number of extensions: 158694 Number of successful extensions: 372 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 371 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 799252350 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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