Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C02f
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z28377-1|CAA82226.1|  264|Caenorhabditis elegans PES-1A protein ...    27   6.4  
Z28376-1|CAA82225.1|  228|Caenorhabditis elegans PES-1B protein ...    27   6.4  
Z28375-1|CAA82224.1|  264|Caenorhabditis elegans PES-1 protein.        27   6.4  
U64609-3|AAB04600.1|  264|Caenorhabditis elegans Patterned expre...    27   6.4  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical
           protein F31B9.1 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 30  RTYFK-CTILLTHALQSSNLENLFKTNCYKYLSNNDNNN 143
           RTYFK C +++ +A+    L  L+   C     N DN+N
Sbjct: 218 RTYFKYCELIVLYAIPLVFLTTLYSIMCRVLWGNEDNHN 256


>Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical
           protein K08H2.5 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 60  THALQSSNLENLFKTNCYK 116
           T AL++SNLE +F  NC+K
Sbjct: 47  TLALKASNLETIFCENCFK 65


>Z28377-1|CAA82226.1|  264|Caenorhabditis elegans PES-1A protein
           protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 30  RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152
           R  +    L+  A+QSS  ++L  +  YKY+S+N +  K +
Sbjct: 93  RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133


>Z28376-1|CAA82225.1|  228|Caenorhabditis elegans PES-1B protein
           protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 30  RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152
           R  +    L+  A+QSS  ++L  +  YKY+S+N +  K +
Sbjct: 57  RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 97


>Z28375-1|CAA82224.1|  264|Caenorhabditis elegans PES-1 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 30  RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152
           R  +    L+  A+QSS  ++L  +  YKY+S+N +  K +
Sbjct: 93  RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133


>U64609-3|AAB04600.1|  264|Caenorhabditis elegans Patterned
           expression site protein 1 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 30  RTYFKCTILLTHALQSSNLENLFKTNCYKYLSNNDNNNKTE 152
           R  +    L+  A+QSS  ++L  +  YKY+S+N +  K +
Sbjct: 93  RPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQ 133


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 27  YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143
           Y T +K  +++  +  S N   N   +  YK L++ND NN
Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 27  YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143
           Y T +K  +++  +  S N   N   +  YK L++ND NN
Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 27  YRTYFKCTILLTHALQSSNLE-NLFKTNCYKYLSNNDNNN 143
           Y T +K  +++  +  S N   N   +  YK L++ND NN
Sbjct: 378 YLTNYKTLVVIIRSTVSMNQNLNAISSAIYKELTSNDGNN 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,436
Number of Sequences: 27780
Number of extensions: 158694
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)