BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C02f (454 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g65980.1 68418.m08307 auxin efflux carrier family protein con... 29 1.1 At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall... 27 7.8 At5g44635.1 68418.m05469 minichromosome maintenance family prote... 27 7.8 >At5g65980.1 68418.m08307 auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547 Length = 395 Score = 29.5 bits (63), Expect = 1.1 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -1 Query: 256 IKTAINIYVYIVRYILISXLGIGVV 182 +K ++ + V IVRYIL+ +G+GVV Sbjct: 299 VKKSVIVGVIIVRYILLPVVGVGVV 323 >At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially targeted (GFA2) 99.8% identical to mitochondrially targeted DnaJ protein GFA2 [Arabidopsis thaliana] GI:21429604; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats) Length = 456 Score = 26.6 bits (56), Expect = 7.8 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +1 Query: 325 LLGRQIQSTSMHLLSTNYKLRGKCYRTADKGAFRRFYXSLGFH 453 LL R+ S+S+ N KLRG C G++RR S+G H Sbjct: 12 LLSRRCLSSSLIQDLANQKLRGVCI-----GSYRRLNTSVGNH 49 >At5g44635.1 68418.m05469 minichromosome maintenance family protein / MCM family protein similar to SP|P97311 DNA replication licensing factor MCM6 {Mus musculus}; contains Pfam profile PF00493: MCM2/3/5 family Length = 831 Score = 26.6 bits (56), Expect = 7.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 242 NCCFYSFIKINHSFIIE*NPSTDVVVMFY 328 N C I++N SFI + P+ D+ V FY Sbjct: 84 NACKRFVIEMNPSFISDDTPNKDINVSFY 112 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,959,112 Number of Sequences: 28952 Number of extensions: 133337 Number of successful extensions: 218 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 218 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 742437000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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