Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C02f
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65980.1 68418.m08307 auxin efflux carrier family protein con...    29   1.1  
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall...    27   7.8  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    27   7.8  

>At5g65980.1 68418.m08307 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 395

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 256 IKTAINIYVYIVRYILISXLGIGVV 182
           +K ++ + V IVRYIL+  +G+GVV
Sbjct: 299 VKKSVIVGVIIVRYILLPVVGVGVV 323


>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
           targeted (GFA2) 99.8% identical to mitochondrially
           targeted DnaJ protein GFA2 [Arabidopsis thaliana]
           GI:21429604; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 456

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 325 LLGRQIQSTSMHLLSTNYKLRGKCYRTADKGAFRRFYXSLGFH 453
           LL R+  S+S+     N KLRG C      G++RR   S+G H
Sbjct: 12  LLSRRCLSSSLIQDLANQKLRGVCI-----GSYRRLNTSVGNH 49


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 242 NCCFYSFIKINHSFIIE*NPSTDVVVMFY 328
           N C    I++N SFI +  P+ D+ V FY
Sbjct: 84  NACKRFVIEMNPSFISDDTPNKDINVSFY 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,959,112
Number of Sequences: 28952
Number of extensions: 133337
Number of successful extensions: 218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)