Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   2.2  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   9.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.0  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   9.0  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   9.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.0  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 356 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 511
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 310 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 453
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = -2

Query: 310  SRISGRILRNADLIIRMCVLTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREETLSHS 131
            S +   +L + D I+   +  +E  +      ++  T H       +   S+REE L  S
Sbjct: 1169 SELLNNLLNDFDKILNFILYNIESKIQTHASFNVTITEHNHVESKARTGFSKREEKLVRS 1228

Query: 130  C 128
            C
Sbjct: 1229 C 1229


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 447 LGGRTDSRTHKDSCQRRQN*PRHG 518
           L G+T  + H +SC  R++  RHG
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHG 72


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 43  HEFSRTRLGDAIDKTSLKILKESYNLADDKNVIAS 147
           + F+R   G       +K+L E+Y+L D+++++ +
Sbjct: 504 YAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVA 538


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 290 NSTRNS*LSPIKYTFPTSISWPTRSPEQRICSEAKWTTLTSA 415
           NST ++ +S    ++ TS   PT S      S A  TT TSA
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSA 436



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 290 NSTRNS*LSPIKYTFPTSISWPTRSPEQRICSEAKWTTLTSA 415
           NST ++ +S    ++ TS   PT S      S A  TT TSA
Sbjct: 509 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSA 550


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 1   VTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 108
           V LV GT AF+M   EF   +    +  +   ILKE
Sbjct: 280 VILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 304 FLTVANKIYVSDQYKLADAFSRTANLFRSEVDNI 405
           FL   N+I V ++  LAD F   A + +  + N+
Sbjct: 59  FLNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNL 92


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 388 SEVDNINFSAPKNAADIINRWADEQ 462
           + + NINF AP+   +I++   +EQ
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQ 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,855
Number of Sequences: 5004
Number of extensions: 43777
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)