Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 50 1e-06
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.004
11_01_0750 - 6315126-6315896,6316371-6316784 35 0.034
03_05_0294 + 22855503-22855946,22856346-22856399 34 0.060
11_02_0011 - 7337618-7338496,7338596-7338991 33 0.11
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.74
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 0.74
06_01_0059 - 510856-511499,511595-511805 29 2.3
11_01_0771 + 6453130-6454488 28 4.0
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 4.0
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 5.2
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 27 6.9
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 6.9
09_02_0226 - 6007656-6008063,6012166-6012678 27 9.1
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 27 9.1
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 49.6 bits (113), Expect = 1e-06
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Frame = +1
Query: 127 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYGLLNQRYAEFDP 300
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 301 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINF-SAPKNAADIINRWAD 456
+ AN ++V +L A++R A+ +R+E ++F + A IN W +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 457 EQTQGHIKTPVSEDKIDPAT 516
T G IK + +D +D AT
Sbjct: 151 SATAGRIKDFLPKDAVDRAT 170
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = +1
Query: 130 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYG------LLNQRYAE 291
+NV SPL + + LSL +GAG +++++ LGG + E H + +L
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 292 FDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFSA-----PKNAADI 438
P+ + A+ ++V L F A +++E +++F P N A+I
Sbjct: 95 GGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQTKWLLLPSNLANI 148
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 35.1 bits (77), Expect = 0.034
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Frame = +1
Query: 133 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----STHTYGLLNQR 282
N S V + L+L GA ++ ++ + LG GG A S +L R
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 283 YAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF-SAPKNAADIINRWAD 456
P+ L A ++ L+ F A N++ S +F + P++A D IN W
Sbjct: 93 STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151
Query: 457 EQTQGHIKTPVSEDKIDPAT 516
+ T+G + T + ID T
Sbjct: 152 DSTKGTVTTLLPAGTIDQNT 171
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 34.3 bits (75), Expect = 0.060
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +1
Query: 121 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYG--LLNQRYA 288
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 289 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF 411
+ P + A+ +++ L +F A +++E +++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 33.5 bits (73), Expect = 0.11
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Frame = +1
Query: 118 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQESTH---TYGLLNQ 279
++ +KN++ SP + L+L +GA + +E+ +LG + +ES GL ++
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 280 RYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFS-APKNAADIINRWA 453
A P+ ++ A ++ + +L A+ + A +++ NF PK + IN+W
Sbjct: 87 S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
Query: 454 DEQTQGHIKTPVSEDKIDPATA 519
+ T I + + + TA
Sbjct: 145 SKATNKLIPEILPDGSVHVDTA 166
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.7 bits (66), Expect = 0.74
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Frame = +1
Query: 100 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQEST 255
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG + +ES
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESV 75
Query: 256 H---TYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKN 426
GL ++ +E ++ A ++ ++ L A+ R A+ R PK+
Sbjct: 76 RRAVEVGLADE--SESGGPRVSYACGVWHDERLALKPAY-RAADFQRQ---------PKS 123
Query: 427 AADIINRWADEQTQGHIKTPVSEDKIDPATA 519
+ IN+W + T I+ + + + TA
Sbjct: 124 SRKKINKWVSKATNKLIREILPDGSVHGGTA 154
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 250 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 158
+L PPLP G PLS P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 160 MLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEFD-PKFLTVANKIYVS 336
+LL + GAG S ++ GGG ++ H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 337 DQYKL--ADAFS 366
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 130 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 249
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +2
Query: 221 KSLGEGRLKSQHTHTDY*ISVTQNSTRNS*LSPIKYTFPTSISWPTRSPEQRICSEAKWT 400
K+ +G L +++ + + + +N T + S K P S S RSP +R S +
Sbjct: 375 KATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPSRRAKSRWEPV 434
Query: 401 TLTSALRRMPLISSTVGRTN 460
++ LIS +TN
Sbjct: 435 VEEKVANKVELISKESAKTN 454
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 226 GFPLSLPWTVHRLQTRTRKAAASRREETLSH 134
GF LS+P T L+ R A ASR TL H
Sbjct: 322 GFHLSVPTTKTFLRRFLRAAQASRNNHTLEH 352
>10_08_0762 - 20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 329 TFPTSISWPTRSPEQRICSEAKWTTLTSALRRMPLISSTVGR 454
+FP +I WP + + IC T+ + PLISS+V R
Sbjct: 936 SFPMNIGWPLSTMDSHIC--------TAGSQETPLISSSVHR 969
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 338 TSISWPTRSPEQRICSEAKWTTLTSALRRMPLISSTVG 451
T++S P+R P +C WT T LR I T G
Sbjct: 28 TNLSHPSRGPVDHLCGRDSWTAKT--LRNEAQIDCTRG 63
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 426 CR*YHQPLGGRTDSRTHKDSCQRR 497
CR +PL R D RTH+ +C RR
Sbjct: 241 CRKCGKPLAVRGDWRTHEKNCGRR 264
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 229 GGGEAQESTHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSEVDNIN 408
GGG E++ YGLL R + P T+ + + ++ + +S + N R E N +
Sbjct: 233 GGGLPPEASRLYGLLQHRQS---PAIATMQTLDFKNSSFRNQE-WSFSFNHQRKETMNPS 288
Query: 409 FSAPKNAADIINRW 450
S+ AA I RW
Sbjct: 289 SSSSTTAA--IRRW 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,111
Number of Sequences: 37544
Number of extensions: 328341
Number of successful extensions: 1042
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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