Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308C01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 42 3e-04
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 40 0.002
SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 29 1.8
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 29 3.1
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 28 4.1
SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 28 5.4
SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2) 28 5.4
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 41.9 bits (94), Expect = 3e-04
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Frame = +1
Query: 163 LLLSLYESGAGAQSKEEIREILGGGEAQ-ESTH-TYGLLNQRYAEFDPKF--LTVANKIY 330
+ L L G+ + +I I G E++ E TH T+ ++ D + + + NKI+
Sbjct: 3 MALGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62
Query: 331 VSDQYKLADAFSR-TANLFRSEVDNINF-SAPKNAADIINRWADEQTQGHIKTPVSEDKI 504
D++++ + F T + SE+ ++F + +A +N W +QT+G+IK + I
Sbjct: 63 GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVI 122
Query: 505 DPAT 516
+ T
Sbjct: 123 NSLT 126
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/131 (19%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +1
Query: 133 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG-GGEAQESTHTYGLLNQRYAEFDPKFL 309
N+ SP +++ L++ GA + ++ + + E H + L + D +
Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDF-LQALNASNSDGNQI 87
Query: 310 TVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFSAPKNAA-DIINRWADEQTQGHIKT 483
+AN+++ +++ + F + + F +E+ +++ N A D +NRW +++T+ IK
Sbjct: 88 LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147
Query: 484 PVSEDKIDPAT 516
+ E + T
Sbjct: 148 LIPEGMFNKDT 158
>SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 320 IKYTFPTSISWPTRSPEQRICSEAKWTTLTSALRRMPL 433
+ ++FP WP+ QR+ S W ++ + RR PL
Sbjct: 40 VYWSFPQLDPWPSVLAFQRVASHHSWPSVLACQRRGPL 77
>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
Length = 354
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 132 ECDSVSSRRDAAAFLVRVWSRCTVQGRDKGNPWGR 236
E DSV + +D+ A W+R + + K NPW R
Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 322 YWRQSRISGRILRNADLIIRMCVLTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREET 143
Y R+S ++ A R C+L+L + G S W VH++ T +K R++
Sbjct: 78 YGLDGRVSDKVF-TATCRARFCLLSLGFTIGFGAMFSKTWRVHQIFTNVKKVKKVVRDKD 136
Query: 142 L 140
L
Sbjct: 137 L 137
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -3
Query: 483 SLYVSLSLFVRPTVDDIS--GILRSAEVNVVHFASEQIRCSGERVGQLILVGN 331
SLY L L + P +D S I +S ++ V++ E+I C+GERV +LV N
Sbjct: 538 SLYDGL-LKLFPECNDASELSIAQSGKLTVLNSMLEEIHCTGERV---VLVSN 586
>SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 204 QGRDKGNPWGRGGSRVNTHIRIIKSALRRIRP 299
QGR K N +G +R N +R + + RR+RP
Sbjct: 7 QGRTKENKGEQGRTRENKELREVHADSRRLRP 38
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 214 IREILGGGEAQESTHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 345
I I GGGE E H G+L + FD F AN + +S +Y
Sbjct: 81 IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122
>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
Length = 157
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = -2
Query: 265 RMCVLTLEPPLPQGFPLSLPWTV-----HRLQTRTRKAAASRR-EETLSHS-CRR 122
R+C+ T PPLP F ++P + H T R + SRR + ++ H CR+
Sbjct: 81 RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 190 LQTRTRKAAASRREETLSHSCRRLGCRIP*ESSRRSCRWHRRVLSLRIHDRTCRTPAFH 14
LQTR + +R SH+CR + + +R R H R RTCR +H
Sbjct: 311 LQTRMQSRMQTRYRHACSHTCRHITDTL---QTRMQIRMHTRY--RHACRRTCRYACWH 364
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,789
Number of Sequences: 59808
Number of extensions: 362164
Number of successful extensions: 1946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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