BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308C01f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 42 3e-04 SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 40 0.002 SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 29 1.8 SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 29 3.1 SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 28 4.1 SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 28 5.4 SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2) 28 5.4 SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_55237| Best HMM Match : Serpin (HMM E-Value=0) Length = 363 Score = 41.9 bits (94), Expect = 3e-04 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Frame = +1 Query: 163 LLLSLYESGAGAQSKEEIREILGGGEAQ-ESTH-TYGLLNQRYAEFDPKF--LTVANKIY 330 + L L G+ + +I I G E++ E TH T+ ++ D + + + NKI+ Sbjct: 3 MALGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62 Query: 331 VSDQYKLADAFSR-TANLFRSEVDNINF-SAPKNAADIINRWADEQTQGHIKTPVSEDKI 504 D++++ + F T + SE+ ++F + +A +N W +QT+G+IK + I Sbjct: 63 GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVI 122 Query: 505 DPAT 516 + T Sbjct: 123 NSLT 126 >SB_38975| Best HMM Match : Serpin (HMM E-Value=0) Length = 380 Score = 39.5 bits (88), Expect = 0.002 Identities = 26/131 (19%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Frame = +1 Query: 133 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG-GGEAQESTHTYGLLNQRYAEFDPKFL 309 N+ SP +++ L++ GA + ++ + + E H + L + D + Sbjct: 29 NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDF-LQALNASNSDGNQI 87 Query: 310 TVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFSAPKNAA-DIINRWADEQTQGHIKT 483 +AN+++ +++ + F + + F +E+ +++ N A D +NRW +++T+ IK Sbjct: 88 LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147 Query: 484 PVSEDKIDPAT 516 + E + T Sbjct: 148 LIPEGMFNKDT 158 >SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 84 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +2 Query: 320 IKYTFPTSISWPTRSPEQRICSEAKWTTLTSALRRMPL 433 + ++FP WP+ QR+ S W ++ + RR PL Sbjct: 40 VYWSFPQLDPWPSVLAFQRVASHHSWPSVLACQRRGPL 77 >SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) Length = 354 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 132 ECDSVSSRRDAAAFLVRVWSRCTVQGRDKGNPWGR 236 E DSV + +D+ A W+R + + K NPW R Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296 >SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) Length = 768 Score = 28.7 bits (61), Expect = 3.1 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = -2 Query: 322 YWRQSRISGRILRNADLIIRMCVLTLEPPLPQGFPLSLPWTVHRLQTRTRKAAASRREET 143 Y R+S ++ A R C+L+L + G S W VH++ T +K R++ Sbjct: 78 YGLDGRVSDKVF-TATCRARFCLLSLGFTIGFGAMFSKTWRVHQIFTNVKKVKKVVRDKD 136 Query: 142 L 140 L Sbjct: 137 L 137 >SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) Length = 764 Score = 28.3 bits (60), Expect = 4.1 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = -3 Query: 483 SLYVSLSLFVRPTVDDIS--GILRSAEVNVVHFASEQIRCSGERVGQLILVGN 331 SLY L L + P +D S I +S ++ V++ E+I C+GERV +LV N Sbjct: 538 SLYDGL-LKLFPECNDASELSIAQSGKLTVLNSMLEEIHCTGERV---VLVSN 586 >SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 80 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 204 QGRDKGNPWGRGGSRVNTHIRIIKSALRRIRP 299 QGR K N +G +R N +R + + RR+RP Sbjct: 7 QGRTKENKGEQGRTRENKELREVHADSRRLRP 38 >SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) Length = 253 Score = 27.9 bits (59), Expect = 5.4 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 214 IREILGGGEAQESTHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 345 I I GGGE E H G+L + FD F AN + +S +Y Sbjct: 81 IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122 >SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2) Length = 157 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Frame = -2 Query: 265 RMCVLTLEPPLPQGFPLSLPWTV-----HRLQTRTRKAAASRR-EETLSHS-CRR 122 R+C+ T PPLP F ++P + H T R + SRR + ++ H CR+ Sbjct: 81 RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135 >SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 430 Score = 27.1 bits (57), Expect = 9.4 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -2 Query: 190 LQTRTRKAAASRREETLSHSCRRLGCRIP*ESSRRSCRWHRRVLSLRIHDRTCRTPAFH 14 LQTR + +R SH+CR + + +R R H R RTCR +H Sbjct: 311 LQTRMQSRMQTRYRHACSHTCRHITDTL---QTRMQIRMHTRY--RHACRRTCRYACWH 364 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.315 0.132 0.370 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,215,789 Number of Sequences: 59808 Number of extensions: 362164 Number of successful extensions: 1946 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1946 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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