Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308C01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    55   3e-08
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    40   8e-04
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   3.3  
At2g37960.1 68415.m04659 expressed protein                             28   4.4  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    27   7.7  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    27   7.7  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
 Frame = +1

Query: 115 NLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEF 294
           ++A+  NV+ SP+ + +LLSL  +G+   +KEEI   L              +     E 
Sbjct: 25  DVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTER 84

Query: 295 DPKFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINFSA-PKNAADIINRWADEQTQ 468
               L+ A+ +++     L  +F     N +++    ++F+  P    D +N WAD  T 
Sbjct: 85  SDLCLSTAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFATKPVEVIDEVNIWADVHTN 144

Query: 469 GHIKTPVSEDKID 507
           G IK  +S D  D
Sbjct: 145 GLIKQILSRDCTD 157


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
 Frame = +1

Query: 118 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIRE--ILGGGEAQES--THTYGLLNQRY 285
           +A+  N++ SP+ + +LL L  +G+   +KE+I    +L   +   +    T  +     
Sbjct: 25  VANGSNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVSVALNDG 84

Query: 286 AEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFSA-PKNAADIINRWADE 459
            E     L+ A  +++        +F     N + +  + ++F+  P    + +N WA+ 
Sbjct: 85  MERSDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWAEV 144

Query: 460 QTQGHIKTPVSEDKI 504
            T G IK  +S+D I
Sbjct: 145 HTNGLIKEILSDDSI 159


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor, Homo
           sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1793

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 193 GAQSKEEIREILGG----GEAQESTHTYGLLNQRYAEFDPKFLTVANKIYV 333
           G +  E IR  L G    GEAQ+         +RY + +PK  T A+  YV
Sbjct: 693 GMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYV 743


>At2g37960.1 68415.m04659 expressed protein
          Length = 480

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 328 YVSDQYKLADAFSRTANLFRSEVDNINFSAP 420
           ++ D+Y   + FS+T +LFRSE  ++  ++P
Sbjct: 26  FLVDRYLCDNRFSKTRSLFRSEASSLISNSP 56


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = +2

Query: 335 PTSISWPTRSPEQRICSEAK------WTTLTSALRRMPL-----ISSTVGRTNRLKDT 475
           P+S S  + SPE  +C EAK      W  ++ + R  PL      SST+G    L +T
Sbjct: 449 PSSFSRASFSPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEMLALTET 506


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = +2

Query: 335 PTSISWPTRSPEQRICSEAK------WTTLTSALRRMPL-----ISSTVGRTNRLKDT 475
           P+S S  + SPE  +C EAK      W  ++ + R  PL      SST+G    L +T
Sbjct: 449 PSSFSRASFSPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEMLALTET 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,364
Number of Sequences: 28952
Number of extensions: 243543
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)