Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308B12f
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    99   4e-22
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    29   0.40 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   2.2  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   2.9  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   3.8  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   3.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.6  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 98.7 bits (235), Expect = 4e-22
 Identities = 58/138 (42%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
 Frame = +2

Query: 2   LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
           LVVQ+ V  E+ ++CGG YLK+   +    +M     Y IMFGPD CG   + VH IF +
Sbjct: 118 LVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVNDR-VHFIFKH 175

Query: 182 KG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--D 334
           K        + HL  +         T+LYTLIVKPD T+EV I+ + V  G L  D+   
Sbjct: 176 KNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPP 235

Query: 335 FLPPKKIKDPEAKKPEDW 388
            LPP +I DPE  KP DW
Sbjct: 236 VLPPVEIYDPEDIKPADW 253



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 326 DWDFLPPKKIKDPEAKKPEDW 388
           DWD   P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289



 Score = 31.5 bits (68), Expect = 0.076
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 326 DWDFLPPKKIKDPEAKKPEDW 388
           DW    P  I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 176 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 352
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES   E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 353 IKDPEAKKPED 385
           +K  +   P+D
Sbjct: 197 MKQKKG-GPKD 206


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +2

Query: 47  GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 214
           G  +LKV +   E   M  ETP +I++   +   G+      +H     K +    KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673

Query: 215 R--CKDDVYTH 241
              CK+D + +
Sbjct: 674 LLFCKEDEFLY 684


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +2

Query: 59  LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 238
           +K+F   + +K  +  +P+E+M  P +  P             K H  + ++R  +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204

Query: 239 HLYTLIVKP 265
           +L   ++KP
Sbjct: 205 YLLNFLLKP 213


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 305 ESGDLEADWDFLPPKKIKDPEAKKPEDW 388
           E   L+     LP  + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 188  KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPE 367
            KNH ++     K+ V      L +  DN Y+ ++ + K +   L+ D    P   +K  +
Sbjct: 995  KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054

Query: 368  AKKPE 382
             K+ E
Sbjct: 1055 MKRRE 1059


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 326 DWDFLPPKKIKDPEAKKPEDW 388
           DWD +P ++ K  EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 EADWDFLPPKKIKD 361
           E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 194 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 307
           H I + +  +++ + HL TL  KPD+   ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,005
Number of Sequences: 5004
Number of extensions: 47039
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)