BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308B12f (511 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 99 4e-22 SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.40 SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.2 SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 2.9 SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.9 SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 3.8 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.8 SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 6.6 SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 6.6 >SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe|chr 1|||Manual Length = 560 Score = 98.7 bits (235), Expect = 4e-22 Identities = 58/138 (42%), Positives = 75/138 (54%), Gaps = 9/138 (6%) Frame = +2 Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181 LVVQ+ V E+ ++CGG YLK+ + +M Y IMFGPD CG + VH IF + Sbjct: 118 LVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVNDR-VHFIFKH 175 Query: 182 KG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--D 334 K + HL + T+LYTLIVKPD T+EV I+ + V G L D+ Sbjct: 176 KNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPP 235 Query: 335 FLPPKKIKDPEAKKPEDW 388 LPP +I DPE KP DW Sbjct: 236 VLPPVEIYDPEDIKPADW 253 Score = 35.1 bits (77), Expect = 0.006 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +2 Query: 326 DWDFLPPKKIKDPEAKKPEDW 388 DWD P+ I DP+A KPEDW Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289 Score = 31.5 bits (68), Expect = 0.076 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +2 Query: 326 DWDFLPPKKIKDPEAKKPEDW 388 DW P I DPEA+KPEDW Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308 >SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 29.1 bits (62), Expect = 0.40 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +2 Query: 176 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE-ADWDFLPPKK 352 S + K H KK +D Y+H+Y + P + + + ++ ES E + D+LP Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196 Query: 353 IKDPEAKKPED 385 +K + P+D Sbjct: 197 MKQKKG-GPKD 206 >SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 26.6 bits (56), Expect = 2.2 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Frame = +2 Query: 47 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 214 G +LKV + E M ETP +I++ + G+ +H K + KK++ Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673 Query: 215 R--CKDDVYTH 241 CK+D + + Sbjct: 674 LLFCKEDEFLY 684 >SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharomyces pombe|chr 1|||Manual Length = 343 Score = 26.2 bits (55), Expect = 2.9 Identities = 17/69 (24%), Positives = 33/69 (47%) Frame = +2 Query: 59 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 238 +K+F + +K + +P+E+M P + P K H + ++R +DV T Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204 Query: 239 HLYTLIVKP 265 +L ++KP Sbjct: 205 YLLNFLLKP 213 >SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 391 Score = 26.2 bits (55), Expect = 2.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 305 ESGDLEADWDFLPPKKIKDPEAKKPEDW 388 E L+ LP + K P AKKPED+ Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184 >SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1405 Score = 25.8 bits (54), Expect = 3.8 Identities = 16/65 (24%), Positives = 29/65 (44%) Frame = +2 Query: 188 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPE 367 KNH ++ K+ V L + DN Y+ ++ + K + L+ D P +K + Sbjct: 995 KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054 Query: 368 AKKPE 382 K+ E Sbjct: 1055 MKRRE 1059 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 25.8 bits (54), Expect = 3.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 326 DWDFLPPKKIKDPEAKKPEDW 388 DWD +P ++ K EA KP DW Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228 >SPAC139.03 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 625 Score = 25.0 bits (52), Expect = 6.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = +2 Query: 320 EADWDFLPPKKIKD 361 E+ +D+LPPKK+ D Sbjct: 179 ESAYDYLPPKKVSD 192 >SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosaccharomyces pombe|chr 1|||Manual Length = 1033 Score = 25.0 bits (52), Expect = 6.6 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 194 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 307 H I + + +++ + HL TL KPD+ ++ID E +E Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,195,005 Number of Sequences: 5004 Number of extensions: 47039 Number of successful extensions: 144 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 204242806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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