Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308B12f
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 190 4e-49
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 189 1e-48
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 182 1e-46
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 174 3e-44
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 105 2e-23
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 89 3e-18
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 3.8
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 28 3.8
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 3.8
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 27 6.6
12_02_0503 - 19756561-19757991,19758606-19759967 27 8.8
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 190 bits (464), Expect = 4e-49
Identities = 81/129 (62%), Positives = 100/129 (77%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDICG TKKVH IF+
Sbjct: 101 LVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTK 160
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG + WD LPPK+IKD
Sbjct: 161 NDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKD 220
Query: 362 PEAKKPEDW 388
PEAKKPEDW
Sbjct: 221 PEAKKPEDW 229
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 189 bits (460), Expect = 1e-48
Identities = 79/129 (61%), Positives = 99/129 (76%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+QF+VKHEQ +DCGGGY+K+ ++QK GETPY IMFGPDICG TKKVH I +
Sbjct: 108 LVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTK 167
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
GKNHLIKKD+ CK D TH+YTLI++PD Y +LIDN + ++G + DW+ +PPK +D
Sbjct: 168 NGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRD 227
Query: 362 PEAKKPEDW 388
PEAKKPEDW
Sbjct: 228 PEAKKPEDW 236
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 182 bits (443), Expect = 1e-46
Identities = 73/129 (56%), Positives = 101/129 (78%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDICG TKK+H+I SY
Sbjct: 99 LVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSY 158
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG + DWD LPP+KIKD
Sbjct: 159 QGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKD 218
Query: 362 PEAKKPEDW 388
AKKP+DW
Sbjct: 219 VHAKKPKDW 227
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 290 DNEKVESGDL--EADWDFLPPKKIKDPEAKKPEDW 388
D E +E D +D +P K+I DP+ KKP+ W
Sbjct: 229 DREYIEDPDAVKPEGYDSIP-KEIPDPKDKKPDTW 262
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 174 bits (424), Expect = 3e-44
Identities = 71/129 (55%), Positives = 97/129 (75%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 181
LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGPDICG TKK+H+I SY
Sbjct: 99 LVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSY 158
Query: 182 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKD 361
+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G + DWD LPP+KIK+
Sbjct: 159 QGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKE 218
Query: 362 PEAKKPEDW 388
AKKP+DW
Sbjct: 219 SNAKKPKDW 227
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 344 PKKIKDPEAKKPEDW 388
PK+I DP+ KKPE W
Sbjct: 248 PKEIPDPKDKKPESW 262
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 105 bits (253), Expect = 2e-23
Identities = 63/143 (44%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Frame = +2
Query: 2 LVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVI 172
+V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD CG T KVH I
Sbjct: 90 VVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG-STNKVHFI 148
Query: 173 FSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID-NEKVESGDLEADW 331
+K GK H +K D +H+YT I+KPDN +L+D EK ++ L AD
Sbjct: 149 LKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANFLSAD- 207
Query: 332 DF----LPPKKIKDPEAKKPEDW 388
DF +P K I DP+ KKPEDW
Sbjct: 208 DFEPSLIPSKTIPDPDDKKPEDW 230
Score = 33.9 bits (74), Expect = 0.076
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 257 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDW 388
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDW 285
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 185 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDP 364
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 365 EAKK 376
EAKK
Sbjct: 575 EAKK 578
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 295 IVNEDFIGVVRFHNQSVQMCVDI 227
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 259 HNQSVQMCVDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS-LSVHVL 89
HN + M V I ++ D M + ++Y +L NV HNL WS ++H+L
Sbjct: 88 HNALLAMAVGISQMQNV--DIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHIL 143
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 284 LIDNEKVESGDLEADWDFLPPKKIKDPE 367
L DN K+++GDL +W P + PE
Sbjct: 107 LTDNSKLDTGDLHGEWKEWRPTQCSVPE 134
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 342 RLRKSRTLKPRNQKTGMTSPLFQTPKTR---SLRIGTSLN 452
RLR + + P++ KT SPL +T ++ SL++G S+N
Sbjct: 228 RLRYAPKIVPKSVKTSSDSPLDRTSVSKRPDSLKLGMSIN 267
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 308 IQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 216
+ ++ C LH CQ SE + +CR H C+
Sbjct: 895 LDINGCCNELHGECQSGGSEWSKICRIHSCN 925
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,489
Number of Sequences: 37544
Number of extensions: 326197
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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